feat: Major directory reorganization and cleanup

Reorganized project structure for better maintainability and reduced
disk usage by 95.9% (11 GB -> 451 MB).

Directory Reorganization (85% reduction in root files):
- Created docs/ with subdirectories (deployment, testing, database, etc.)
- Created infrastructure/vpn-configs/ for VPN scripts
- Moved 90+ files from root to organized locations
- Archived obsolete documentation (context system, offline mode, zombie debugging)
- Moved all test files to tests/ directory
- Root directory: 119 files -> 18 files

Disk Cleanup (10.55 GB recovered):
- Deleted Rust build artifacts: 9.6 GB (target/ directories)
- Deleted Python virtual environments: 161 MB (venv/ directories)
- Deleted Python cache: 50 KB (__pycache__/)

New Structure:
- docs/ - All documentation organized by category
- docs/archives/ - Obsolete but preserved documentation
- infrastructure/ - VPN configs and SSH setup
- tests/ - All test files consolidated
- logs/ - Ready for future logs

Benefits:
- Cleaner root directory (18 vs 119 files)
- Logical organization of documentation
- 95.9% disk space reduction
- Faster navigation and discovery
- Better portability (build artifacts excluded)

Build artifacts can be regenerated:
- Rust: cargo build --release (5-15 min per project)
- Python: pip install -r requirements.txt (2-3 min)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

docs/deployment/deploy_recall_fix.sh

@@ -0,0 +1,40 @@
+#!/bin/bash
+# Deploy recall endpoint fix to RMM server
+
+echo "[1/3] Copying updated conversation_contexts.py to RMM server..."
+scp /d/ClaudeTools/api/routers/conversation_contexts.py 172.16.3.30:/tmp/conversation_contexts.py
+
+echo "[2/3] Moving file to production location..."
+ssh 172.16.3.30 "sudo mv /tmp/conversation_contexts.py /opt/claudetools/api/routers/conversation_contexts.py && sudo chown claudetools:claudetools /opt/claudetools/api/routers/conversation_contexts.py"
+
+echo "[3/3] Restarting API service..."
+ssh 172.16.3.30 "sudo systemctl restart claudetools-api && sleep 2 && sudo systemctl status claudetools-api --no-pager | head -15"
+
+echo ""
+echo "[DONE] Deployment complete. Testing API..."
+
+# Test the API
+python - <<'PYTEST'
+import requests
+import json
+
+jwt_token = "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJzdWIiOiJpbXBvcnQtc2NyaXB0Iiwic2NvcGVzIjpbImFkbWluIiwiaW1wb3J0Il0sImV4cCI6MTc3MTI3NTEyOX0.-DJF50tq0MaNwVQBdO7cGYNuO5pQuXte-tTj5DpHi2U"
+
+response = requests.get(
+    "http://172.16.3.30:8001/api/conversation-contexts/recall",
+    headers={"Authorization": f"Bearer {jwt_token}"},
+    params={"search_term": "dataforth", "limit": 2}
+)
+
+print(f"\n[TEST] API Status: {response.status_code}")
+data = response.json()
+
+if "contexts" in data:
+    print(f"[SUCCESS] Recall endpoint updated!")
+    print(f"Total: {data['total']}, Returned: {len(data['contexts'])}")
+    for ctx in data['contexts']:
+        print(f"  - {ctx['title'][:50]}")
+else:
+    print(f"[WARNING] Still old format")
+    print(json.dumps(data, indent=2)[:200])
+PYTEST