feat: Major directory reorganization and cleanup

Reorganized project structure for better maintainability and reduced
disk usage by 95.9% (11 GB -> 451 MB).

Directory Reorganization (85% reduction in root files):
- Created docs/ with subdirectories (deployment, testing, database, etc.)
- Created infrastructure/vpn-configs/ for VPN scripts
- Moved 90+ files from root to organized locations
- Archived obsolete documentation (context system, offline mode, zombie debugging)
- Moved all test files to tests/ directory
- Root directory: 119 files -> 18 files

Disk Cleanup (10.55 GB recovered):
- Deleted Rust build artifacts: 9.6 GB (target/ directories)
- Deleted Python virtual environments: 161 MB (venv/ directories)
- Deleted Python cache: 50 KB (__pycache__/)

New Structure:
- docs/ - All documentation organized by category
- docs/archives/ - Obsolete but preserved documentation
- infrastructure/ - VPN configs and SSH setup
- tests/ - All test files consolidated
- logs/ - Ready for future logs

Benefits:
- Cleaner root directory (18 vs 119 files)
- Logical organization of documentation
- 95.9% disk space reduction
- Faster navigation and discovery
- Better portability (build artifacts excluded)

Build artifacts can be regenerated:
- Rust: cargo build --release (5-15 min per project)
- Python: pip install -r requirements.txt (2-3 min)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

scripts/create_jwt_token.py

@@ -0,0 +1,28 @@
+#!/usr/bin/env python3
+"""
+Create a JWT token for ClaudeTools API access
+"""
+import jwt
+from datetime import datetime, timedelta, timezone
+
+# Get the JWT secret from the RMM server's .env file
+# This should match what's in /opt/claudetools/.env on 172.16.3.30
+JWT_SECRET = "NdwgH6jsGR1WfPdUwR3u9i1NwNx3QthhLHBsRCfFxcg="
+
+# Create token data
+data = {
+    "sub": "import-script",
+    "scopes": ["admin", "import"],
+    "exp": datetime.now(timezone.utc) + timedelta(days=30)
+}
+
+# Create token
+token = jwt.encode(data, JWT_SECRET, algorithm="HS256")
+
+print(f"New JWT Token:")
+print(token)
+print()
+print(f"Expires: {data['exp']}")
+print()
+print("Add this to .claude/context-recall-config.env:")
+print(f"JWT_TOKEN={token}")