   150→  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}/skip`, {
   151→    method: 'PATCH',
   152→  })
   153→}
   154→
   155→// ============================================================================
   156→// Agent API
   157→// ============================================================================
   158→
   159→export async function getAgentStatus(projectName: string): Promise<AgentStatusResponse> {
   160→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/status`)
   161→}
   162→
   163→export async function startAgent(
   164→  projectName: string,
   165→  yoloMode: boolean = false
   166→): Promise<AgentActionResponse> {
   167→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/start`, {
   168→    method: 'POST',
   169→    body: JSON.stringify({ yolo_mode: yoloMode }),
   170→  })
   171→}
   172→
   173→export async function stopAgent(projectName: string): Promise<AgentActionResponse> {
   174→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/stop`, {
   175→    method: 'POST',
   176→  })
   177→}
   178→
   179→export async function pauseAgent(projectName: string): Promise<AgentActionResponse> {
   180→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/pause`, {
   181→    method: 'POST',
   182→  })
   183→}
   184→
   185→export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
   186→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
   187→    method: 'POST',
   188→  })
   189→}
   190→
   191→// ============================================================================
   192→// Spec Creation API
   193→// ============================================================================
   194→
   195→export interface SpecFileStatus {
   196→  exists: boolean
   197→  status: 'complete' | 'in_progress' | 'not_started' | 'error' | 'unknown'
   198→  feature_count: number | null
   199→  timestamp: string | null
   200→  files_written: string[]
   201→}
   202→
   203→export async function getSpecStatus(projectName: string): Promise<SpecFileStatus> {
   204→  return fetchJSON(`/spec/status/${encodeURIComponent(projectName)}`)
   205→}
   206→
   207→// ============================================================================
   208→// Setup API
   209→// ============================================================================
   210→
   211→export async function getSetupStatus(): Promise<SetupStatus> {
   212→  return fetchJSON('/setup/status')
   213→}
   214→
   215→export async function healthCheck(): Promise<{ status: string }> {
   216→  return fetchJSON('/health')
   217→}
   218→
   219→// ============================================================================
   220→// Filesystem API
   221→// ============================================================================
   222→
   223→export async function listDirectory(path?: string): Promise<DirectoryListResponse> {
   224→  const params = path ? `?path=${encodeURIComponent(path)}` : ''
   225→  return fetchJSON(`/filesystem/list${params}`)
   226→}
   227→
   228→export async function createDirectory(fullPath: string): Promise<{ success: boolean; path: string }> {
   229→  // Backend expects { parent_path, name }, not { path }
   230→  // Split the full path into parent directory and folder name
   231→
   232→  // Remove trailing slash if present
   233→  const normalizedPath = fullPath.endsWith('/') ? fullPath.slice(0, -1) : fullPath
   234→
   235→  // Find the last path separator
   236→  const lastSlash = normalizedPath.lastIndexOf('/')
   237→
   238→  let parentPath: string
   239→  let name: string
   240→
   241→  // Handle Windows drive root (e.g., "C:/newfolder")
   242→  if (lastSlash === 2 && /^[A-Za-z]:/.test(normalizedPath)) {
   243→    // Path like "C:/newfolder" - parent is "C:/"
   244→    parentPath = normalizedPath.substring(0, 3) // "C:/"
   245→    name = normalizedPath.substring(3)
   246→  } else if (lastSlash > 0) {
   247→    parentPath = normalizedPath.substring(0, lastSlash)
   248→    name = normalizedPath.substring(lastSlash + 1)
   249→  } else if (lastSlash === 0) {

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}/skip`, {
    method: 'PATCH',
  })
}

// ============================================================================
// Agent API
// ============================================================================

export async function getAgentStatus(projectName: string): Promise<AgentStatusResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/status`)
}

export async function startAgent(
  projectName: string,
  yoloMode: boolean = false
): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/start`, {
    method: 'POST',
    body: JSON.stringify({ yolo_mode: yoloMode }),
  })
}

export async function stopAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/stop`, {
    method: 'POST',
  })
}

export async function pauseAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/pause`, {
    method: 'POST',
  })
}

export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
    method: 'POST',
  })
}

// ============================================================================
// Spec Creation API
// ============================================================================

export interface SpecFileStatus {
  exists: boolean
  status: 'complete' | 'in_progress' | 'not_started' | 'error' | 'unknown'
  feature_count: number | null
  timestamp: string | null
  files_written: string[]
}

export async function getSpecStatus(projectName: string): Promise<SpecFileStatus> {
  return fetchJSON(`/spec/status/${encodeURIComponent(projectName)}`)
}

// ============================================================================
// Setup API
// ============================================================================

export async function getSetupStatus(): Promise<SetupStatus> {
  return fetchJSON('/setup/status')
}

export async function healthCheck(): Promise<{ status: string }> {
  return fetchJSON('/health')
}

// ============================================================================
// Filesystem API
// ============================================================================

export async function listDirectory(path?: string): Promise<DirectoryListResponse> {
  const params = path ? `?path=${encodeURIComponent(path)}` : ''
  return fetchJSON(`/filesystem/list${params}`)
}

export async function createDirectory(fullPath: string): Promise<{ success: boolean; path: string }> {
  // Backend expects { parent_path, name }, not { path }
  // Split the full path into parent directory and folder name

  // Remove trailing slash if present
  const normalizedPath = fullPath.endsWith('/') ? fullPath.slice(0, -1) : fullPath

  // Find the last path separator
  const lastSlash = normalizedPath.lastIndexOf('/')

  let parentPath: string
  let name: string

  // Handle Windows drive root (e.g., "C:/newfolder")
  if (lastSlash === 2 && /^[A-Za-z]:/.test(normalizedPath)) {
    // Path like "C:/newfolder" - parent is "C:/"
    parentPath = normalizedPath.substring(0, 3) // "C:/"
    name = normalizedPath.substring(3)
  } else if (lastSlash > 0) {
    parentPath = normalizedPath.substring(0, lastSlash)
    name = normalizedPath.substring(lastSlash + 1)
  } else if (lastSlash === 0) {


Good, I can see the Agent API section. Let me add the reinitAgent and getFeatureStats functions to the API.


Edit

export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
    method: 'POST',
  })
}

export async function reinitAgent(
  projectName: string,
  keepPassing: boolean = false,
  yoloMode: boolean = false
): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/reinit`, {
    method: 'POST',
    body: JSON.stringify({ keep_passing: keepPassing, yolo_mode: yoloMode }),
  })
}

// ============================================================================
// Feature Stats API
// ============================================================================

export interface FeatureStats {
  has_spec: boolean
  has_features: boolean
  needs_init: boolean
  stats: {
    pending: number
    in_progress: number
    completed: number
    total: number
  }
}

export async function getFeatureStats(projectName: string): Promise<FeatureStats> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/stats`)
}

export async function resetFeatures(
  projectName: string,
  keepPassing: boolean = false
): Promise<{ success: boolean; deleted: number; kept: number }> {
  const params = keepPassing ? '?keep_passing=true' : ''
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/reset${params}`, {
    method: 'POST',
  })
}

// ============================================================================
// Spec Creation API
// ============================================================================


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\lib\api.ts has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
   181→    method: 'POST',
   182→  })
   183→}
   184→
   185→export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
   186→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
   187→    method: 'POST',
   188→  })
   189→}
   190→
   191→export async function reinitAgent(
   192→  projectName: string,
   193→  keepPassing: boolean = false,
   194→  yoloMode: boolean = false
   195→): Promise<AgentActionResponse> {
   196→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/reinit`, {
   197→    method: 'POST',
   198→    body: JSON.stringify({ keep_passing: keepPassing, yolo_mode: yoloMode }),
   199→  })
   200→}
   201→
   202→// ============================================================================
   203→// Feature Stats API
   204→// ============================================================================
   205→
   206→export interface FeatureStats {
   207→  has_spec: boolean
   208→  has_features: boolean
   209→  needs_init: boolean
   210→  stats: {
   211→    pending: number
   212→    in_progress: number
   213→    completed: number
   214→    total: number
   215→  }
   216→}
   217→
   218→export async function getFeatureStats(projectName: string): Promise<FeatureStats> {
   219→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/stats`)
   220→}
   221→
   222→export async function resetFeatures(
   223→  projectName: string,
   224→  keepPassing: boolean = false
   225→): Promise<{ success: boolean; deleted: number; kept: number }> {
   226→  const params = keepPassing ? '?keep_passing=true' : ''
   227→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/reset${params}`, {
   228→    method: 'POST',
   229→  })
   230→}
   231→
   232→// ============================================================================
   233→// Spec Creation API
   234→// ============================================================================
   235→
   236→export interface SpecFileStatus {
   237→  exists: boolean
   238→  status: 'complete' | 'in_progress' | 'not_started' | 'error' | 'unknown'

export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
    method: 'POST',
  })
}

export async function reinitAgent(
  projectName: string,
  keepPassing: boolean = false,
  yoloMode: boolean = false
): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/reinit`, {
    method: 'POST',
    body: JSON.stringify({ keep_passing: keepPassing, yolo_mode: yoloMode }),
  })
}

// ============================================================================
// Feature Stats API
// ============================================================================

export interface FeatureStats {
  has_spec: boolean
  has_features: boolean
  needs_init: boolean
  stats: {
    pending: number
    in_progress: number
    completed: number
    total: number
  }
}

export async function getFeatureStats(projectName: string): Promise<FeatureStats> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/stats`)
}

export async function resetFeatures(
  projectName: string,
  keepPassing: boolean = false
): Promise<{ success: boolean; deleted: number; kept: number }> {
  const params = keepPassing ? '?keep_passing=true' : ''
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/reset${params}`, {
    method: 'POST',
  })
}

// ============================================================================
// Spec Creation API
// ============================================================================

/**
 * API Client for the Autonomous Coding UI
 */

import type {
  ProjectSummary,
  ProjectDetail,
  ProjectPrompts,
  FeatureListResponse,
  Feature,
  FeatureCreate,
  AgentStatusResponse,
  AgentActionResponse,
  SetupStatus,
  DirectoryListResponse,
  PathValidationResponse,
  AssistantConversation,
  AssistantConversationDetail,
  ReferenceFolder,
  ReferenceFolderCreate,
  ReferenceFolderUpdate,
} from './types'

const API_BASE = '/api'

async function fetchJSON<T>(url: string, options?: RequestInit): Promise<T> {
  const response = await fetch(`${API_BASE}${url}`, {
    ...options,
    headers: {
      'Content-Type': 'application/json',
      ...options?.headers,
    },
  })

  if (!response.ok) {
    const error = await response.json().catch(() => ({ detail: 'Unknown error' }))
    throw new Error(error.detail || `HTTP ${response.status}`)
  }

  return response.json()
}

// ============================================================================
// Projects API
// ============================================================================

export async function listProjects(): Promise<ProjectSummary[]> {
  return fetchJSON('/projects')
}

export async function createProject(
  name: string,
  path: string,
  specMethod: 'claude' | 'manual' = 'manual'
): Promise<ProjectSummary> {
  return fetchJSON('/projects', {
    method: 'POST',
    body: JSON.stringify({ name, path, spec_method: specMethod }),
  })
}

export async function getProject(name: string): Promise<ProjectDetail> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}`)
}

export interface DeleteProjectResponse {
  success: boolean
  message: string
}

export async function deleteProject(
  name: string,
  deleteFiles: boolean = false
): Promise<DeleteProjectResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}?delete_files=${deleteFiles}`, {
    method: 'DELETE',
  })
}

// Import an existing project (analyzes codebase)
export interface CodebaseAnalysis {
  total_files: number
  file_types: Record<string, number>
  detected_stack: Record<string, string>
  has_claude_md: boolean
  claude_md_content: string | null
  has_readme: boolean
  readme_content: string | null
  directories: string[]
  entry_points: string[]
  project_name: string | null
}

export interface ProjectImportResponse {
  project: ProjectSummary
  analysis: CodebaseAnalysis
  is_import: boolean
}

export async function importProject(
  name: string,
  path: string
): Promise<ProjectImportResponse> {
  return fetchJSON('/projects/import', {
    method: 'POST',
    body: JSON.stringify({ name, path }),
  })
}

export async function getProjectPrompts(name: string): Promise<ProjectPrompts> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`)
}

export async function updateProjectPrompts(
  name: string,
  prompts: Partial<ProjectPrompts>
): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`, {
    method: 'PUT',
    body: JSON.stringify(prompts),
  })
}

// ============================================================================
// Features API
// ============================================================================

export async function listFeatures(projectName: string): Promise<FeatureListResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`)
}

export async function createFeature(projectName: string, feature: FeatureCreate): Promise<Feature> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`, {
    method: 'POST',
    body: JSON.stringify(feature),
  })
}

export async function getFeature(projectName: string, featureId: number): Promise<Feature> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`)
}

export async function deleteFeature(projectName: string, featureId: number): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`, {
    method: 'DELETE',
  })
}

export async function skipFeature(projectName: string, featureId: number): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}/skip`, {
    method: 'PATCH',
  })
}

// ============================================================================
// Agent API
// ============================================================================

export async function getAgentStatus(projectName: string): Promise<AgentStatusResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/status`)
}

export async function startAgent(
  projectName: string,
  yoloMode: boolean = false
): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/start`, {
    method: 'POST',
    body: JSON.stringify({ yolo_mode: yoloMode }),
  })
}

export async function stopAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/stop`, {
    method: 'POST',
  })
}

export async function pauseAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/pause`, {
    method: 'POST',
  })
}

export async function resumeAgent(projectName: string): Promise<AgentActionResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/resume`, {
    method: 'POST',
  })
}

// ============================================================================
// Spec Creation API
// ============================================================================

export interface SpecFileStatus {
  exists: boolean
  status: 'complete' | 'in_progress' | 'not_started' | 'error' | 'unknown'
  feature_count: number | null
  timestamp: string | null
  files_written: string[]
}

export async function getSpecStatus(projectName: string): Promise<SpecFileStatus> {
  return fetchJSON(`/spec/status/${encodeURIComponent(projectName)}`)
}

// ============================================================================
// Setup API
// ============================================================================

export async function getSetupStatus(): Promise<SetupStatus> {
  return fetchJSON('/setup/status')
}

export async function healthCheck(): Promise<{ status: string }> {
  return fetchJSON('/health')
}

// ============================================================================
// Filesystem API
// ============================================================================

export async function listDirectory(path?: string): Promise<DirectoryListResponse> {
  const params = path ? `?path=${encodeURIComponent(path)}` : ''
  return fetchJSON(`/filesystem/list${params}`)
}

export async function createDirectory(fullPath: string): Promise<{ success: boolean; path: string }> {
  // Backend expects { parent_path, name }, not { path }
  // Split the full path into parent directory and folder name

  // Remove trailing slash if present
  const normalizedPath = fullPath.endsWith('/') ? fullPath.slice(0, -1) : fullPath

  // Find the last path separator
  const lastSlash = normalizedPath.lastIndexOf('/')

  let parentPath: string
  let name: string

  // Handle Windows drive root (e.g., "C:/newfolder")
  if (lastSlash === 2 && /^[A-Za-z]:/.test(normalizedPath)) {
    // Path like "C:/newfolder" - parent is "C:/"
    parentPath = normalizedPath.substring(0, 3) // "C:/"
    name = normalizedPath.substring(3)
  } else if (lastSlash > 0) {
    parentPath = normalizedPath.substring(0, lastSlash)
    name = normalizedPath.substring(lastSlash + 1)
  } else if (lastSlash === 0) {
    // Unix root path like "/newfolder"
    parentPath = '/'
    name = normalizedPath.substring(1)
  } else {
    // No slash - invalid path
    throw new Error('Invalid path: must be an absolute path')
  }

  if (!name) {
    throw new Error('Invalid path: directory name is empty')
  }

  return fetchJSON('/filesystem/create-directory', {
    method: 'POST',
    body: JSON.stringify({ parent_path: parentPath, name }),
  })
}

export async function validatePath(path: string): Promise<PathValidationResponse> {
  return fetchJSON('/filesystem/validate', {
    method: 'POST',
    body: JSON.stringify({ path }),
  })
}

// ============================================================================
// Assistant Chat API
// ============================================================================

export async function listAssistantConversations(
  projectName: string
): Promise<AssistantConversation[]> {
  return fetchJSON(`/assistant/conversations/${encodeURIComponent(projectName)}`)
}

export async function getAssistantConversation(
  projectName: string,
  conversationId: number
): Promise<AssistantConversationDetail> {
  return fetchJSON(
    `/assistant/conversations/${encodeURIComponent(projectName)}/${conversationId}`
  )
}

export async function createAssistantConversation(
  projectName: string
): Promise<AssistantConversation> {
  return fetchJSON(`/assistant/conversations/${encodeURIComponent(projectName)}`, {
    method: 'POST',
  })
}

export async function deleteAssistantConversation(
  projectName: string,
  conversationId: number
): Promise<void> {
  await fetchJSON(
    `/assistant/conversations/${encodeURIComponent(projectName)}/${conversationId}`,
    { method: 'DELETE' }
  )
}

// ============================================================================
// Reference Folder API
// ============================================================================

export async function listReferences(projectName: string): Promise<ReferenceFolder[]> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/references`)
}

export async function addReference(
  projectName: string,
  data: ReferenceFolderCreate
): Promise<ReferenceFolder> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/references`, {
    method: 'POST',
    body: JSON.stringify(data),
  })
}

export async function removeReference(
  projectName: string,
  referenceId: number
): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/references/${referenceId}`, {
    method: 'DELETE',
  })
}

export async function updateReference(
  projectName: string,
  referenceId: number,
  data: ReferenceFolderUpdate
): Promise<ReferenceFolder> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/references/${referenceId}`, {
    method: 'PATCH',
    body: JSON.stringify(data),
  })
}

+  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/agent/reinit`, {

+    body: JSON.stringify({ keep_passing: keepPassing, yolo_mode: yoloMode }),

+export async function getFeatureStats(projectName: string): Promise<FeatureStats> {

+  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/stats`)

+): Promise<{ success: boolean; deleted: number; kept: number }> {

+  const params = keepPassing ? '?keep_passing=true' : ''

+  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/reset${params}`, {


Now let me add the React Query hooks for the new API functions.


export function useResumeAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.resumeAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

// ============================================================================
// Setup
// ============================================================================

export function useResumeAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.resumeAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useReinitAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ keepPassing, yoloMode }: { keepPassing?: boolean; yoloMode?: boolean } = {}) =>
      api.reinitAgent(projectName, keepPassing, yoloMode),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
    },
  })
}

export function useFeatureStats(projectName: string | null) {
  return useQuery({
    queryKey: ['feature-stats', projectName],
    queryFn: () => api.getFeatureStats(projectName!),
    enabled: !!projectName,
    refetchInterval: 10000, // Refetch every 10 seconds
  })
}

export function useResetFeatures(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (keepPassing: boolean = false) => api.resetFeatures(projectName, keepPassing),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
    },
  })
}

// ============================================================================
// Setup
// ============================================================================


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\hooks\useProjects.ts has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
   152→    },
   153→  })
   154→}
   155→
   156→export function useResumeAgent(projectName: string) {
   157→  const queryClient = useQueryClient()
   158→
   159→  return useMutation({
   160→    mutationFn: () => api.resumeAgent(projectName),
   161→    onSuccess: () => {
   162→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   163→    },
   164→  })
   165→}
   166→
   167→export function useReinitAgent(projectName: string) {
   168→  const queryClient = useQueryClient()
   169→
   170→  return useMutation({
   171→    mutationFn: ({ keepPassing, yoloMode }: { keepPassing?: boolean; yoloMode?: boolean } = {}) =>
   172→      api.reinitAgent(projectName, keepPassing, yoloMode),
   173→    onSuccess: () => {
   174→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   175→      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
   176→      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
   177→    },
   178→  })
   179→}
   180→
   181→export function useFeatureStats(projectName: string | null) {
   182→  return useQuery({
   183→    queryKey: ['feature-stats', projectName],
   184→    queryFn: () => api.getFeatureStats(projectName!),
   185→    enabled: !!projectName,
   186→    refetchInterval: 10000, // Refetch every 10 seconds
   187→  })
   188→}
   189→
   190→export function useResetFeatures(projectName: string) {
   191→  const queryClient = useQueryClient()
   192→
   193→  return useMutation({
   194→    mutationFn: (keepPassing: boolean = false) => api.resetFeatures(projectName, keepPassing),
   195→    onSuccess: () => {
   196→      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
   197→      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
   198→    },
   199→  })
   200→}
   201→
   202→// ============================================================================
   203→// Setup
   204→// ============================================================================
   205→
   206→export function useSetupStatus() {
   207→  return useQuery({
   208→    queryKey: ['setup-status'],

export function useResumeAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.resumeAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useReinitAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ keepPassing, yoloMode }: { keepPassing?: boolean; yoloMode?: boolean } = {}) =>
      api.reinitAgent(projectName, keepPassing, yoloMode),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
    },
  })
}

export function useFeatureStats(projectName: string | null) {
  return useQuery({
    queryKey: ['feature-stats', projectName],
    queryFn: () => api.getFeatureStats(projectName!),
    enabled: !!projectName,
    refetchInterval: 10000, // Refetch every 10 seconds
  })
}

export function useResetFeatures(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (keepPassing: boolean = false) => api.resetFeatures(projectName, keepPassing),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })
    },
  })
}

// ============================================================================
// Setup
// ============================================================================

/**
 * React Query hooks for project data
 */

import { useQuery, useMutation, useQueryClient } from '@tanstack/react-query'
import * as api from '../lib/api'
import type { FeatureCreate, ReferenceFolderCreate, ReferenceFolderUpdate } from '../lib/types'

// ============================================================================
// Projects
// ============================================================================

export function useProjects() {
  return useQuery({
    queryKey: ['projects'],
    queryFn: api.listProjects,
  })
}

export function useProject(name: string | null) {
  return useQuery({
    queryKey: ['project', name],
    queryFn: () => api.getProject(name!),
    enabled: !!name,
  })
}

export function useCreateProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, path, specMethod }: { name: string; path: string; specMethod?: 'claude' | 'manual' }) =>
      api.createProject(name, path, specMethod),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

export function useDeleteProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, deleteFiles = false }: { name: string; deleteFiles?: boolean }) =>
      api.deleteProject(name, deleteFiles),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

export function useImportProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, path }: { name: string; path: string }) =>
      api.importProject(name, path),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

// ============================================================================
// Features
// ============================================================================

export function useFeatures(projectName: string | null) {
  return useQuery({
    queryKey: ['features', projectName],
    queryFn: () => api.listFeatures(projectName!),
    enabled: !!projectName,
    refetchInterval: 5000, // Refetch every 5 seconds for real-time updates
  })
}

export function useCreateFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (feature: FeatureCreate) => api.createFeature(projectName, feature),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

export function useDeleteFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (featureId: number) => api.deleteFeature(projectName, featureId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

export function useSkipFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (featureId: number) => api.skipFeature(projectName, featureId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

// ============================================================================
// Agent
// ============================================================================

export function useAgentStatus(projectName: string | null) {
  return useQuery({
    queryKey: ['agent-status', projectName],
    queryFn: () => api.getAgentStatus(projectName!),
    enabled: !!projectName,
    refetchInterval: 3000, // Poll every 3 seconds
  })
}

export function useStartAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (yoloMode: boolean = false) => api.startAgent(projectName, yoloMode),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useStopAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.stopAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function usePauseAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.pauseAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useResumeAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.resumeAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

// ============================================================================
// Setup
// ============================================================================

export function useSetupStatus() {
  return useQuery({
    queryKey: ['setup-status'],
    queryFn: api.getSetupStatus,
    staleTime: 60000, // Cache for 1 minute
  })
}

export function useHealthCheck() {
  return useQuery({
    queryKey: ['health'],
    queryFn: api.healthCheck,
    retry: false,
  })
}

// ============================================================================
// Filesystem
// ============================================================================

export function useListDirectory(path?: string) {
  return useQuery({
    queryKey: ['filesystem', 'list', path],
    queryFn: () => api.listDirectory(path),
  })
}

export function useCreateDirectory() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (path: string) => api.createDirectory(path),
    onSuccess: (_, path) => {
      // Invalidate parent directory listing
      const parentPath = path.split('/').slice(0, -1).join('/') || undefined
      queryClient.invalidateQueries({ queryKey: ['filesystem', 'list', parentPath] })
    },
  })
}

export function useValidatePath() {
  return useMutation({
    mutationFn: (path: string) => api.validatePath(path),
  })
}

// ============================================================================
// Reference Folders
// ============================================================================

export function useReferences(projectName: string | null) {
  return useQuery({
    queryKey: ['references', projectName],
    queryFn: () => api.listReferences(projectName!),
    enabled: !!projectName,
  })
}

export function useAddReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (data: ReferenceFolderCreate) => api.addReference(projectName, data),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}

export function useRemoveReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (referenceId: number) => api.removeReference(projectName, referenceId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}

export function useUpdateReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ id, data }: { id: number; data: ReferenceFolderUpdate }) =>
      api.updateReference(projectName, id, data),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}

+export function useReinitAgent(projectName: string) {

+    mutationFn: ({ keepPassing, yoloMode }: { keepPassing?: boolean; yoloMode?: boolean } = {}) =>

+      api.reinitAgent(projectName, keepPassing, yoloMode),

+      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })

+      queryClient.invalidateQueries({ queryKey: ['features', projectName] })

+      queryClient.invalidateQueries({ queryKey: ['feature-stats', projectName] })

+export function useFeatureStats(projectName: string | null) {

+    queryKey: ['feature-stats', projectName],

+    queryFn: () => api.getFeatureStats(projectName!),

+    refetchInterval: 10000, // Refetch every 10 seconds

+export function useResetFeatures(projectName: string) {

+    mutationFn: (keepPassing: boolean = false) => api.resetFeatures(projectName, keepPassing),


Now let me update the AgentControl component to include a re-init button that shows when the project needs initialization or when the user wants to re-initialize.


import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
  useReinitAgent,
  useFeatureStats,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)
  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)
  const reinitAgent = useReinitAgent(projectName)
  const featureStats = useFeatureStats(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending ||
    reinitAgent.isPending

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\components\AgentControl.tsx has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
     1→import { useState } from 'react'
     2→import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
     3→import {
     4→  useStartAgent,
     5→  useStopAgent,
     6→  usePauseAgent,
     7→  useResumeAgent,
     8→  useReinitAgent,
     9→  useFeatureStats,
    10→} from '../hooks/useProjects'
    11→import type { AgentStatus } from '../lib/types'
    12→
    13→interface AgentControlProps {
    14→  projectName: string
    15→  status: AgentStatus
    16→  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
    17→}
    18→
    19→export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
    20→  const [yoloEnabled, setYoloEnabled] = useState(false)
    21→  const [showReinitConfirm, setShowReinitConfirm] = useState(false)
    22→
    23→  const startAgent = useStartAgent(projectName)
    24→  const stopAgent = useStopAgent(projectName)
    25→  const pauseAgent = usePauseAgent(projectName)
    26→  const resumeAgent = useResumeAgent(projectName)
    27→  const reinitAgent = useReinitAgent(projectName)
    28→  const featureStats = useFeatureStats(projectName)
    29→
    30→  const isLoading =
    31→    startAgent.isPending ||
    32→    stopAgent.isPending ||
    33→    pauseAgent.isPending ||
    34→    resumeAgent.isPending ||
    35→    reinitAgent.isPending
    36→
    37→  // Check if project needs initialization
    38→  const needsInit = featureStats.data?.needs_init ?? false
    39→  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0
    40→
    41→  const handleStart = () => startAgent.mutate(yoloEnabled)
    42→  const handleStop = () => stopAgent.mutate()
    43→  const handlePause = () => pauseAgent.mutate()

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
  useReinitAgent,
  useFeatureStats,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)
  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)
  const reinitAgent = useReinitAgent(projectName)
  const featureStats = useFeatureStats(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending ||
    reinitAgent.isPending

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()

  return (

      {/* Status Indicator */}
      <StatusIndicator status={status} />

      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
      {(status === 'running' || status === 'paused') && yoloMode && (

          <Zap size={14} className="text-yellow-900" />

            YOLO

      )}

      {/* Control Buttons */}

        {status === 'stopped' || status === 'crashed' ? (
          <>
            {/* YOLO Toggle - only shown when stopped */}
            <button
              onClick={() => setYoloEnabled(!yoloEnabled)}
              className={`neo-btn text-sm py-2 px-3 ${
                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
              }`}
              title="YOLO Mode: Skip testing for rapid prototyping"
            >
              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
            </button>
            <button
              onClick={handleStart}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
          </>
        ) : status === 'running' ? (
          <>
            <button
              onClick={handlePause}
              disabled={isLoading}
              className="neo-btn neo-btn-warning text-sm py-2 px-3"
              title="Pause Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Pause size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : status === 'paused' ? (
          <>
            <button
              onClick={handleResume}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title="Resume Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : null}

  )
}

function StatusIndicator({ status }: { status: AgentStatus }) {
  const statusConfig = {
    stopped: {
      color: 'var(--color-neo-text-secondary)',
      label: 'Stopped',
      pulse: false,
    },
    running: {
      color: 'var(--color-neo-done)',
      label: 'Running',
      pulse: true,
    },
    paused: {
      color: 'var(--color-neo-pending)',
      label: 'Paused',
      pulse: false,
    },
    crashed: {
      color: 'var(--color-neo-danger)',
      label: 'Crashed',
      pulse: true,
    },
  }

  const config = statusConfig[status]

  return (

      <span
        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
        style={{ backgroundColor: config.color }}
      />

        {config.label}

  )
}

-import { Play, Pause, Square, Loader2, Zap } from 'lucide-react'

+import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'

+  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

+  const reinitAgent = useReinitAgent(projectName)

+  const featureStats = useFeatureStats(projectName)

+  // Check if project needs initialization

+  const needsInit = featureStats.data?.needs_init ?? false

+  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0


Conversation compacted


This session is being continued from a previous conversation that ran out of context. The conversation is summarized below:
Analysis:
Let me analyze the conversation chronologically to capture all important details:

1. **Initial Context**: The conversation was continued from a previous session about Autocoder 2.0. Several files were read at startup including global_resources.json, CLAUDE.md, and session logs.

2. **Zombie Process Fix**: User noticed Autocoder creates zombie processes. I investigated and found the issue - when stopping an agent, child processes (MCP servers, Playwright) weren't being killed. I fixed this by:
   - Adding `_kill_process_tree()` method to process_manager.py using `psutil.Process.children(recursive=True)`
   - Updating `stop()` to kill entire process tree
   - Adding `find_orphan_processes()` and `kill_orphan_processes()` utility functions
   - Creating new system router with `/api/system/orphans` and `/api/system/cleanup` endpoints

3. **App Spec Creation**: User wanted a conversational app spec for Autocoder to improve itself. Created APP_SPEC_CONVERSATION.md with detailed enhancements organized by priority.

4. **Terminal Session Persistence Bug**: User reported terminal sessions aren't persistent when navigating away. I fixed by:
   - Adding `_session_started` flag to TerminalSession class
   - Adding `get_message_history()` and `is_active()` methods
   - Modifying `start()` to restore history on reconnect
   - Adding `session_restored` and `history` WebSocket message types
   - Adding `newSession()` function to UI hook
   - Adding "New Session" button and "Session Restored" badge to UI

5. **Terminal Timeout Warning**: User mentioned warnings about timeouts. I increased timeout from 10s to 30s since Claude SDK can take time to initialize.

6. **Re-init Feature Request**: User noticed a project with 0/0 tasks (initializer never ran) and wanted a re-init button. I'm currently implementing:
   - Backend: Added `/reset` and `/stats` endpoints to features router, `/reinit` endpoint to agent router
   - API: Added `reinitAgent`, `getFeatureStats`, `resetFeatures` functions
   - Hooks: Added `useReinitAgent`, `useFeatureStats`, `useResetFeatures`
   - UI: Currently editing AgentControl.tsx to add the re-init button

Current incomplete work: The AgentControl.tsx edit is partially complete - I've added the imports and state variables but haven't added the UI elements for the re-init button yet.

Summary:
1. Primary Request and Intent:
   - **Zombie Process Fix**: User noticed Autocoder creates zombie processes that need cleanup mechanism
   - **App Spec for Self-Improvement**: User wanted a conversational app spec prompt for Autocoder to enhance itself
   - **Terminal Session Persistence**: User reported terminal sessions are lost when navigating away - needed to be persistent
   - **Terminal Timeout Warning**: User mentioned timeout warnings appearing in terminal
   - **Re-init Feature**: User noticed a project with 0/0 tasks (initializer never ran) and wants a button to re-initialize projects

2. Key Technical Concepts:
   - Process tree termination using `psutil.Process.children(recursive=True)`
   - WebSocket session persistence with message history restoration
   - Claude Agent SDK initialization timeouts
   - Feature database (SQLite) management for project initialization
   - React Query mutations and queries for state management
   - FastAPI REST endpoints with Pydantic models

3. Files and Code Sections:

   - **`server/services/process_manager.py`** - Core process management for agents
     - Added `_kill_process_tree()` method to kill all child processes
     - Updated `stop()` to use tree kill instead of just parent
     - Added `find_orphan_processes()` and `kill_orphan_processes()` utilities
     ```python
     def _kill_process_tree(self, pid: int, timeout: float = 5.0) -> int:
         killed_count = 0
         try:
             parent = psutil.Process(pid)
             children = parent.children(recursive=True)
             parent.terminate()
             for child in children:
                 try:
                     child.terminate()
                 except psutil.NoSuchProcess:
                     pass
             gone, alive = psutil.wait_procs([parent] + children, timeout=timeout)
             killed_count = len(gone)
             for proc in alive:
                 try:
                     proc.kill()
                     killed_count += 1
                 except psutil.NoSuchProcess:
                     pass
         except psutil.NoSuchProcess:
             pass
         return killed_count
     ```

   - **`server/routers/system.py`** - NEW file for system cleanup endpoints
     ```python
     @router.get("/orphans")
     async def list_orphan_processes():
         orphans = find_orphan_processes()
         return {"count": len(orphans), "processes": orphans}

     @router.post("/cleanup")
     async def cleanup_orphan_processes():
         results = kill_orphan_processes()
         return results
     ```

   - **`server/services/terminal_session.py`** - Terminal session management
     - Added `_session_started` flag to track if session was initialized
     - Added `get_message_history()` and `is_active()` methods
     - Modified `start()` to restore history on reconnection:
     ```python
     async def start(self, force_new: bool = False) -> AsyncGenerator[dict, None]:
         if self._session_started and not force_new and self._client_entered:
             yield {"type": "session_restored", "message_count": len(self.messages)}
             for msg in self.messages:
                 yield {"type": "history", "role": msg.get("role"), "content": msg.get("content"), "timestamp": msg.get("timestamp")}
             yield {"type": "resources", "data": self.get_resources()}
             yield {"type": "response_done"}
             return
     ```

   - **`server/routers/terminal.py`** - Terminal WebSocket router
     - Added `new_session` and `get_history` message types
     - Updated protocol documentation

   - **`ui/src/hooks/useTerminal.ts`** - Terminal React hook
     - Added `isRestoredSession` state
     - Added handlers for `session_restored`, `history`, `history_response` messages
     - Added `newSession()` function
     - Increased timeout from 10s to 30s

   - **`ui/src/components/TerminalChat.tsx`** - Terminal UI component
     - Added "Session Restored" badge
     - Added "New Session" button

   - **`server/routers/features.py`** - Features API
     - Added `/reset` endpoint to clear features
     - Added `/stats` endpoint to get feature statistics and init status:
     ```python
     @router.get("/stats")
     async def get_feature_stats(project_name: str):
         return {
             "has_spec": has_spec,
             "has_features": has_features,
             "needs_init": has_spec and not has_features,
             "stats": stats,
         }
     ```

   - **`server/routers/agent.py`** - Agent control API
     - Added `ReinitRequest` Pydantic model
     - Added `/reinit` endpoint:
     ```python
     @router.post("/reinit", response_model=AgentActionResponse)
     async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):
         # 1. Stop any running agent
         # 2. Reset features database
         # 3. Start agent (will run initializer since features empty)
     ```

   - **`ui/src/lib/api.ts`** - API client functions
     - Added `reinitAgent()`, `getFeatureStats()`, `resetFeatures()` functions
     - Added `FeatureStats` interface

   - **`ui/src/hooks/useProjects.ts`** - React Query hooks
     - Added `useReinitAgent()`, `useFeatureStats()`, `useResetFeatures()` hooks

   - **`ui/src/components/AgentControl.tsx`** - CURRENTLY BEING EDITED
     - Added imports for `RefreshCw`, `useReinitAgent`, `useFeatureStats`
     - Added state variables `showReinitConfirm`, `needsInit`, `hasNoFeatures`
     - **INCOMPLETE**: UI elements for re-init button not yet added

   - **`APP_SPEC_CONVERSATION.md`** - Comprehensive enhancement spec
     - Lists 10 enhancement areas with priorities
     - Documents what already exists
     - Includes recent bug fixes applied
     - Provides file location references

4. Errors and Fixes:
   - **Port 8080 already in use**: Killed Python processes with `taskkill` and restarted server
   - **PowerShell variable escaping**: Bash shell was transforming `Analysis:
Let me analyze the conversation chronologically to capture all important details:

1. **Initial Context**: The conversation was continued from a previous session about Autocoder 2.0. Several files were read at startup including global_resources.json, CLAUDE.md, and session logs.

2. **Zombie Process Fix**: User noticed Autocoder creates zombie processes. I investigated and found the issue - when stopping an agent, child processes (MCP servers, Playwright) weren't being killed. I fixed this by:
   - Adding `_kill_process_tree()` method to process_manager.py using `psutil.Process.children(recursive=True)`
   - Updating `stop()` to kill entire process tree
   - Adding `find_orphan_processes()` and `kill_orphan_processes()` utility functions
   - Creating new system router with `/api/system/orphans` and `/api/system/cleanup` endpoints

3. **App Spec Creation**: User wanted a conversational app spec for Autocoder to improve itself. Created APP_SPEC_CONVERSATION.md with detailed enhancements organized by priority.

4. **Terminal Session Persistence Bug**: User reported terminal sessions aren't persistent when navigating away. I fixed by:
   - Adding `_session_started` flag to TerminalSession class
   - Adding `get_message_history()` and `is_active()` methods
   - Modifying `start()` to restore history on reconnect
   - Adding `session_restored` and `history` WebSocket message types
   - Adding `newSession()` function to UI hook
   - Adding "New Session" button and "Session Restored" badge to UI

5. **Terminal Timeout Warning**: User mentioned warnings about timeouts. I increased timeout from 10s to 30s since Claude SDK can take time to initialize.

6. **Re-init Feature Request**: User noticed a project with 0/0 tasks (initializer never ran) and wanted a re-init button. I'm currently implementing:
   - Backend: Added `/reset` and `/stats` endpoints to features router, `/reinit` endpoint to agent router
   - API: Added `reinitAgent`, `getFeatureStats`, `resetFeatures` functions
   - Hooks: Added `useReinitAgent`, `useFeatureStats`, `useResetFeatures`
   - UI: Currently editing AgentControl.tsx to add the re-init button

Current incomplete work: The AgentControl.tsx edit is partially complete - I've added the imports and state variables but haven't added the UI elements for the re-init button yet.

 variables, used simpler `taskkill` approach
   - **Missing BaseModel import**: Added `from pydantic import BaseModel` to agent.py

5. Problem Solving:
   - **Zombie processes**: Solved by implementing process tree termination
   - **Terminal persistence**: Solved by storing message history and restoring on reconnect
   - **Timeout warnings**: Solved by increasing timeout from 10s to 30s
   - **Re-init feature**: In progress - backend complete, UI partially complete

6. All User Messages:
   - "I've noticed running autocoder creates zombie processes all over the place, let's make sure that there is a mechanism to prevent that"
   - "Yes, but format it as conversational. I'm using the appspec interview. I think we should allow for flexibility in stack decisions, claude can choose to make changes if it feels necessary."
   - "Update conversational app spec prompt with everything we've talked about so far."
   - "Curiosity: Are there limits on the claude windows for CPU/GPU/Memory usage?"
   - "In v2 there is a project, but it looks like the initializer didn't run on that project, 0/0 tasks. Can we add a button to re-init? Something like the re-spec I had envisioned that allows v2 to re-scan the project, determine which projects need to be added to the registry (or removed) and re populate or update the project/feature list?"
   - "Also there is a marking in terminal that often state there was a timeout." (during terminal fix)
   - "Sorry, I meant warning" (clarification about terminal timeout)

7. Pending Tasks:
   - Complete AgentControl.tsx re-init button UI
   - Update APP_SPEC_CONVERSATION.md with re-init feature
   - Rebuild UI and test re-init functionality

8. Current Work:
   Implementing the re-init feature for projects that have 0/0 tasks. Backend is complete with:
   - `/api/projects/{name}/features/reset` - Reset features
   - `/api/projects/{name}/features/stats` - Get feature stats including `needs_init` flag
   - `/api/projects/{name}/agent/reinit` - Full reinit (stop agent, reset features, restart)

   Currently editing `AgentControl.tsx` - added imports and state variables but the actual UI button and confirmation dialog are not yet implemented. The edit was interrupted at:
   ```typescript
   const needsInit = featureStats.data?.needs_init ?? false
   const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0
   ```

9. Optional Next Step:
   Complete the AgentControl.tsx component by adding the re-init button UI. User explicitly requested: "Can we add a button to re-init?" The UI needs:
   - A re-init/refresh button (using RefreshCw icon)
   - Possibly a confirmation dialog since this resets features
   - Show prominent "Initialize" button when `needsInit` is true (project has spec but no features)
   - Then rebuild UI with `npm run build` and restart server.

If you need specific details from before compaction (like exact code snippets, error messages, or content you generated), read the full transcript at: C:\Users\MikeSwanson\.claude\projects\C--Users-MikeSwanson-claude-projects\ffbb1d55-48d7-4643-9b87-12eb26d1bfa4.jsonl
Please continue the conversation from where we left it off without asking the user any further questions. Continue with the last task that you were asked to work on.


Looking at the summary, I was in the middle of implementing the re-init feature for the AgentControl.tsx component. The backend is complete, the API client functions are added, and the React Query hooks are in place. I just need to complete the UI for the re-init button.

Looking at the current state of AgentControl.tsx that was just read:
1. It has the imports for RefreshCw, useReinitAgent, useFeatureStats
2. It has the state for showReinitConfirm
3. It has the needsInit and hasNoFeatures variables
4. But the actual re-init button UI is NOT present

I need to add:
1. A re-init button that shows when the project needs initialization or when user wants to re-run the initializer
2. Possibly a confirmation dialog since this resets features
3. The handleReinit function

Let me complete this implementation.


I'll continue completing the re-init button UI in AgentControl.tsx. Looking at the current code, I have the imports and state variables but need to add the actual button UI and handler logic.


  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()
  const handleReinit = () => {
    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })
    setShowReinitConfirm(false)
  }


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\components\AgentControl.tsx has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
    37→  // Check if project needs initialization
    38→  const needsInit = featureStats.data?.needs_init ?? false
    39→  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0
    40→
    41→  const handleStart = () => startAgent.mutate(yoloEnabled)
    42→  const handleStop = () => stopAgent.mutate()
    43→  const handlePause = () => pauseAgent.mutate()
    44→  const handleResume = () => resumeAgent.mutate()
    45→  const handleReinit = () => {
    46→    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })
    47→    setShowReinitConfirm(false)
    48→  }
    49→
    50→  return (
    51→    <div className="flex items-center gap-2">
    52→      {/* Status Indicator */}

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()
  const handleReinit = () => {
    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })
    setShowReinitConfirm(false)
  }

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
  useReinitAgent,
  useFeatureStats,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)
  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)
  const reinitAgent = useReinitAgent(projectName)
  const featureStats = useFeatureStats(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending ||
    reinitAgent.isPending

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()

  return (

      {/* Status Indicator */}
      <StatusIndicator status={status} />

      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
      {(status === 'running' || status === 'paused') && yoloMode && (

          <Zap size={14} className="text-yellow-900" />

            YOLO

      )}

      {/* Control Buttons */}

        {status === 'stopped' || status === 'crashed' ? (
          <>
            {/* YOLO Toggle - only shown when stopped */}
            <button
              onClick={() => setYoloEnabled(!yoloEnabled)}
              className={`neo-btn text-sm py-2 px-3 ${
                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
              }`}
              title="YOLO Mode: Skip testing for rapid prototyping"
            >
              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
            </button>
            <button
              onClick={handleStart}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
          </>
        ) : status === 'running' ? (
          <>
            <button
              onClick={handlePause}
              disabled={isLoading}
              className="neo-btn neo-btn-warning text-sm py-2 px-3"
              title="Pause Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Pause size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : status === 'paused' ? (
          <>
            <button
              onClick={handleResume}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title="Resume Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : null}

  )
}

function StatusIndicator({ status }: { status: AgentStatus }) {
  const statusConfig = {
    stopped: {
      color: 'var(--color-neo-text-secondary)',
      label: 'Stopped',
      pulse: false,
    },
    running: {
      color: 'var(--color-neo-done)',
      label: 'Running',
      pulse: true,
    },
    paused: {
      color: 'var(--color-neo-pending)',
      label: 'Paused',
      pulse: false,
    },
    crashed: {
      color: 'var(--color-neo-danger)',
      label: 'Crashed',
      pulse: true,
    },
  }

  const config = statusConfig[status]

  return (

      <span
        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
        style={{ backgroundColor: config.color }}
      />

        {config.label}

  )
}

+    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })


Good, I added the handleReinit function. Now I need to add the actual UI button for re-initialization. Looking at the component structure, I should add a re-init button that shows when the project is stopped/crashed and either needs initialization or has features that can be reset.

Let me add the re-init button and confirmation dialog to the UI.


Now I'll add the re-init button UI and confirmation dialog. Let me add it after the control buttons section:


        ) : null}
      </div>
    </div>
  )

) : null}

        {/* Re-init Button - shown when stopped/crashed and has spec */}
        {(status === 'stopped' || status === 'crashed') && (
          <button
            onClick={() => needsInit ? handleReinit() : setShowReinitConfirm(true)}
            disabled={isLoading}
            className={`neo-btn text-sm py-2 px-3 ${
              needsInit ? 'neo-btn-primary' : 'neo-btn-secondary'
            }`}
            title={needsInit ? "Initialize project from app spec" : "Re-initialize project (reset features)"}
          >
            {isLoading && reinitAgent.isPending ? (
              <Loader2 size={18} className="animate-spin" />
            ) : (
              <RefreshCw size={18} />
            )}
          </button>
        )}

      {/* Re-init Confirmation Dialog */}
      {showReinitConfirm && (

Re-initialize Project?

              This will reset all features and re-run the initializer from the app spec.
              {featureStats.data?.stats.completed > 0 && (

                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!

              )}

              <button
                onClick={() => setShowReinitConfirm(false)}
                className="neo-btn neo-btn-secondary text-sm py-2 px-4"
              >
                Cancel
              </button>
              <button
                onClick={handleReinit}
                disabled={isLoading}
                className="neo-btn neo-btn-danger text-sm py-2 px-4"
              >
                {isLoading ? (
                  <Loader2 size={16} className="animate-spin" />
                ) : (
                  'Reset & Re-init'
                )}
              </button>

      )}

  )


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\components\AgentControl.tsx has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
   134→            >
   135→              <Square size={18} />
   136→            </button>
   137→          </>
   138→        ) : null}
   139→
   140→        {/* Re-init Button - shown when stopped/crashed and has spec */}
   141→        {(status === 'stopped' || status === 'crashed') && (
   142→          <button
   143→            onClick={() => needsInit ? handleReinit() : setShowReinitConfirm(true)}
   144→            disabled={isLoading}
   145→            className={`neo-btn text-sm py-2 px-3 ${
   146→              needsInit ? 'neo-btn-primary' : 'neo-btn-secondary'
   147→            }`}
   148→            title={needsInit ? "Initialize project from app spec" : "Re-initialize project (reset features)"}
   149→          >
   150→            {isLoading && reinitAgent.isPending ? (
   151→              <Loader2 size={18} className="animate-spin" />
   152→            ) : (
   153→              <RefreshCw size={18} />
   154→            )}
   155→          </button>
   156→        )}
   157→

   158→
   159→      {/* Re-init Confirmation Dialog */}
   160→      {showReinitConfirm && (
   161→

   162→

   163→
Re-initialize Project?

   164→

   165→              This will reset all features and re-run the initializer from the app spec.
   166→              {featureStats.data?.stats.completed > 0 && (
   167→
   168→                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!
   169→
   170→              )}
   171→

   172→

   173→              <button
   174→                onClick={() => setShowReinitConfirm(false)}
   175→                className="neo-btn neo-btn-secondary text-sm py-2 px-4"
   176→              >
   177→                Cancel
   178→              </button>
   179→              <button
   180→                onClick={handleReinit}
   181→                disabled={isLoading}
   182→                className="neo-btn neo-btn-danger text-sm py-2 px-4"
   183→              >
   184→                {isLoading ? (
   185→                  <Loader2 size={16} className="animate-spin" />
   186→                ) : (
   187→                  'Reset & Re-init'
   188→                )}
   189→              </button>
   190→

   191→

   192→

   193→      )}
   194→

   195→  )
   196→}
   197→
   198→function StatusIndicator({ status }: { status: AgentStatus }) {
   199→  const statusConfig = {

        ) : null}
      </div>
    </div>
  )

) : null}

        {/* Re-init Button - shown when stopped/crashed and has spec */}
        {(status === 'stopped' || status === 'crashed') && (
          <button
            onClick={() => needsInit ? handleReinit() : setShowReinitConfirm(true)}
            disabled={isLoading}
            className={`neo-btn text-sm py-2 px-3 ${
              needsInit ? 'neo-btn-primary' : 'neo-btn-secondary'
            }`}
            title={needsInit ? "Initialize project from app spec" : "Re-initialize project (reset features)"}
          >
            {isLoading && reinitAgent.isPending ? (
              <Loader2 size={18} className="animate-spin" />
            ) : (
              <RefreshCw size={18} />
            )}
          </button>
        )}

      {/* Re-init Confirmation Dialog */}
      {showReinitConfirm && (

Re-initialize Project?

              This will reset all features and re-run the initializer from the app spec.
              {featureStats.data?.stats.completed > 0 && (

                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!

              )}

              <button
                onClick={() => setShowReinitConfirm(false)}
                className="neo-btn neo-btn-secondary text-sm py-2 px-4"
              >
                Cancel
              </button>
              <button
                onClick={handleReinit}
                disabled={isLoading}
                className="neo-btn neo-btn-danger text-sm py-2 px-4"
              >
                {isLoading ? (
                  <Loader2 size={16} className="animate-spin" />
                ) : (
                  'Reset & Re-init'
                )}
              </button>

      )}

  )

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
  useReinitAgent,
  useFeatureStats,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)
  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)
  const reinitAgent = useReinitAgent(projectName)
  const featureStats = useFeatureStats(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending ||
    reinitAgent.isPending

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()
  const handleReinit = () => {
    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })
    setShowReinitConfirm(false)
  }

  return (

      {/* Status Indicator */}
      <StatusIndicator status={status} />

      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
      {(status === 'running' || status === 'paused') && yoloMode && (

          <Zap size={14} className="text-yellow-900" />

            YOLO

      )}

      {/* Control Buttons */}

        {status === 'stopped' || status === 'crashed' ? (
          <>
            {/* YOLO Toggle - only shown when stopped */}
            <button
              onClick={() => setYoloEnabled(!yoloEnabled)}
              className={`neo-btn text-sm py-2 px-3 ${
                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
              }`}
              title="YOLO Mode: Skip testing for rapid prototyping"
            >
              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
            </button>
            <button
              onClick={handleStart}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
          </>
        ) : status === 'running' ? (
          <>
            <button
              onClick={handlePause}
              disabled={isLoading}
              className="neo-btn neo-btn-warning text-sm py-2 px-3"
              title="Pause Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Pause size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : status === 'paused' ? (
          <>
            <button
              onClick={handleResume}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title="Resume Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : null}

  )
}

function StatusIndicator({ status }: { status: AgentStatus }) {
  const statusConfig = {
    stopped: {
      color: 'var(--color-neo-text-secondary)',
      label: 'Stopped',
      pulse: false,
    },
    running: {
      color: 'var(--color-neo-done)',
      label: 'Running',
      pulse: true,
    },
    paused: {
      color: 'var(--color-neo-pending)',
      label: 'Paused',
      pulse: false,
    },
    crashed: {
      color: 'var(--color-neo-danger)',
      label: 'Crashed',
      pulse: true,
    },
  }

  const config = statusConfig[status]

  return (

      <span
        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
        style={{ backgroundColor: config.color }}
      />

        {config.label}

  )
}

+        {/* Re-init Button - shown when stopped/crashed and has spec */}

+        {(status === 'stopped' || status === 'crashed') && (

+            onClick={() => needsInit ? handleReinit() : setShowReinitConfirm(true)}

+            className={`neo-btn text-sm py-2 px-3 ${

+              needsInit ? 'neo-btn-primary' : 'neo-btn-secondary'

+            title={needsInit ? "Initialize project from app spec" : "Re-initialize project (reset features)"}

+            {isLoading && reinitAgent.isPending ? (

+              <Loader2 size={18} className="animate-spin" />

+      {/* Re-init Confirmation Dialog */}

+        <div className="fixed inset-0 bg-black/50 flex items-center justify-center z-50">

+          <div className="bg-white border-4 border-[var(--color-neo-border)] p-6 max-w-md shadow-neo">

+            <p className="text-sm mb-4">

+              This will reset all features and re-run the initializer from the app spec.

+              {featureStats.data?.stats.completed > 0 && (

+                <span className="block mt-2 text-[var(--color-neo-danger)] font-bold">

+                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!

+            <div className="flex gap-2 justify-end">

+                onClick={() => setShowReinitConfirm(false)}

+                className="neo-btn neo-btn-secondary text-sm py-2 px-4"

+                className="neo-btn neo-btn-danger text-sm py-2 px-4"

+                  <Loader2 size={16} className="animate-spin" />


The UI changes are complete. Now I need to:
1. Build the UI
2. Restart the server (if needed)

Let me also update the todo list and then build the UI.


Now let me build the UI and update the todo list:


TodoWrite

Add re-init endpoint to features router

Add re-init button to UI

Build and test UI changes

Update APP_SPEC with re-init feature


Todos have been modified successfully. Ensure that you continue to use the todo list to track your progress. Please proceed with the current tasks if applicable

Add re-init endpoint to features router

Add re-init button to UI

Update APP_SPEC with re-init feature

Add re-init endpoint to features router

Add re-init button to UI

Build and test UI changes

Update APP_SPEC with re-init feature


Let me check the background bash output to see what's happening, then build the UI.


Bash

cd C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui && npm run build

Build the React UI


Error: Exit code 1
/usr/bin/bash: line 1: cd: C:UsersMikeSwansonclaude-projectsAutocode-remixAutocoder-2.0ui: No such file or directory


I need to use the correct path format for Windows.


cd "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/ui" && npm run build

Build the React UI


Error: Exit code 1

> autocoder@1.0.0 build
> tsc -b && vite build

src/components/AgentControl.tsx(39,9): error TS6133: 'hasNoFeatures' is declared but its value is never read.
src/components/AgentControl.tsx(166,16): error TS18048: 'featureStats.data.stats.completed' is possibly 'undefined'.
src/components/AgentControl.tsx(168,29): error TS18048: 'featureStats.data' is possibly 'undefined'.


I have some TypeScript errors:
1. `hasNoFeatures` is unused - I can remove it
2. `featureStats.data.stats.completed` might be undefined - need to use optional chaining

Let me fix these.


Let me fix the TypeScript errors:


Edit

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const completedCount = featureStats.data?.stats?.completed ?? 0


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\ui\src\components\AgentControl.tsx has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
    33→    pauseAgent.isPending ||
    34→    resumeAgent.isPending ||
    35→    reinitAgent.isPending
    36→
    37→  // Check if project needs initialization
    38→  const needsInit = featureStats.data?.needs_init ?? false
    39→  const completedCount = featureStats.data?.stats?.completed ?? 0
    40→
    41→  const handleStart = () => startAgent.mutate(yoloEnabled)
    42→  const handleStop = () => stopAgent.mutate()
    43→  const handlePause = () => pauseAgent.mutate()

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const completedCount = featureStats.data?.stats?.completed ?? 0

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap, RefreshCw } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
  useReinitAgent,
  useFeatureStats,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)
  const [showReinitConfirm, setShowReinitConfirm] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)
  const reinitAgent = useReinitAgent(projectName)
  const featureStats = useFeatureStats(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending ||
    reinitAgent.isPending

  // Check if project needs initialization
  const needsInit = featureStats.data?.needs_init ?? false
  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()
  const handleReinit = () => {
    reinitAgent.mutate({ keepPassing: false, yoloMode: yoloEnabled })
    setShowReinitConfirm(false)
  }

  return (

      {/* Status Indicator */}
      <StatusIndicator status={status} />

      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
      {(status === 'running' || status === 'paused') && yoloMode && (

          <Zap size={14} className="text-yellow-900" />

            YOLO

      )}

      {/* Control Buttons */}

        {status === 'stopped' || status === 'crashed' ? (
          <>
            {/* YOLO Toggle - only shown when stopped */}
            <button
              onClick={() => setYoloEnabled(!yoloEnabled)}
              className={`neo-btn text-sm py-2 px-3 ${
                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
              }`}
              title="YOLO Mode: Skip testing for rapid prototyping"
            >
              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
            </button>
            <button
              onClick={handleStart}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
          </>
        ) : status === 'running' ? (
          <>
            <button
              onClick={handlePause}
              disabled={isLoading}
              className="neo-btn neo-btn-warning text-sm py-2 px-3"
              title="Pause Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Pause size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : status === 'paused' ? (
          <>
            <button
              onClick={handleResume}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title="Resume Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : null}

        {/* Re-init Button - shown when stopped/crashed and has spec */}
        {(status === 'stopped' || status === 'crashed') && (
          <button
            onClick={() => needsInit ? handleReinit() : setShowReinitConfirm(true)}
            disabled={isLoading}
            className={`neo-btn text-sm py-2 px-3 ${
              needsInit ? 'neo-btn-primary' : 'neo-btn-secondary'
            }`}
            title={needsInit ? "Initialize project from app spec" : "Re-initialize project (reset features)"}
          >
            {isLoading && reinitAgent.isPending ? (
              <Loader2 size={18} className="animate-spin" />
            ) : (
              <RefreshCw size={18} />
            )}
          </button>
        )}

      {/* Re-init Confirmation Dialog */}
      {showReinitConfirm && (

Re-initialize Project?

              This will reset all features and re-run the initializer from the app spec.
              {featureStats.data?.stats.completed > 0 && (

                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!

              )}

              <button
                onClick={() => setShowReinitConfirm(false)}
                className="neo-btn neo-btn-secondary text-sm py-2 px-4"
              >
                Cancel
              </button>
              <button
                onClick={handleReinit}
                disabled={isLoading}
                className="neo-btn neo-btn-danger text-sm py-2 px-4"
              >
                {isLoading ? (
                  <Loader2 size={16} className="animate-spin" />
                ) : (
                  'Reset & Re-init'
                )}
              </button>

      )}

  )
}

function StatusIndicator({ status }: { status: AgentStatus }) {
  const statusConfig = {
    stopped: {
      color: 'var(--color-neo-text-secondary)',
      label: 'Stopped',
      pulse: false,
    },
    running: {
      color: 'var(--color-neo-done)',
      label: 'Running',
      pulse: true,
    },
    paused: {
      color: 'var(--color-neo-pending)',
      label: 'Paused',
      pulse: false,
    },
    crashed: {
      color: 'var(--color-neo-danger)',
      label: 'Crashed',
      pulse: true,
    },
  }

  const config = statusConfig[status]

  return (

      <span
        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
        style={{ backgroundColor: config.color }}
      />

        {config.label}

  )
}

-  const hasNoFeatures = (featureStats.data?.stats.total ?? 0) === 0

+  const completedCount = featureStats.data?.stats?.completed ?? 0


Now I need to update the template where `featureStats.data?.stats.completed` is used to use `completedCount` instead.


              {featureStats.data?.stats.completed > 0 && (
                <span className="block mt-2 text-[var(--color-neo-danger)] font-bold">
                  Warning: {featureStats.data.stats.completed} completed feature(s) will be reset!

              {completedCount > 0 && (
                <span className="block mt-2 text-[var(--color-neo-danger)] font-bold">
                  Warning: {completedCount} completed feature(s) will be reset!