The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\server\routers\features.py has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
   256→        logger.exception("Failed to delete feature")
   257→        raise HTTPException(status_code=500, detail="Failed to delete feature")
   258→
   259→
   260→@router.post("/reset")
   261→async def reset_features(project_name: str, keep_passing: bool = False):
   262→    """
   263→    Reset all features for a project.
   264→
   265→    Args:
   266→        keep_passing: If True, keep features that have already passed
   267→
   268→    This is useful when you want to re-initialize the project from the app spec.
   269→    """
   270→    project_name = validate_project_name(project_name)
   271→    project_dir = _get_project_path(project_name)
   272→
   273→    if not project_dir:
   274→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   275→
   276→    if not project_dir.exists():
   277→        raise HTTPException(status_code=404, detail="Project directory not found")
   278→
   279→    db_file = project_dir / "features.db"
   280→    if not db_file.exists():
   281→        return {"success": True, "message": "No features to reset", "deleted": 0, "kept": 0}
   282→
   283→    _, Feature = _get_db_classes()
   284→
   285→    try:
   286→        with get_db_session(project_dir) as session:
   287→            if keep_passing:
   288→                # Delete only non-passing features
   289→                deleted = session.query(Feature).filter(Feature.passes == False).delete()
   290→                kept = session.query(Feature).count()
   291→            else:
   292→                # Delete all features
   293→                deleted = session.query(Feature).delete()
   294→                kept = 0
   295→
   296→            session.commit()
   297→
   298→            return {
   299→                "success": True,
   300→                "message": f"Reset features: {deleted} deleted, {kept} kept",
   301→                "deleted": deleted,
   302→                "kept": kept,
   303→            }
   304→    except HTTPException:
   305→        raise
   306→    except Exception:
   307→        logger.exception("Failed to reset features")
   308→        raise HTTPException(status_code=500, detail="Failed to reset features")
   309→
   310→
   311→@router.get("/stats")
   312→async def get_feature_stats(project_name: str):
   313→    """
   314→    Get feature statistics for a project.
   315→
   316→    Returns counts of pending, in_progress, and completed features,
   317→    plus info about whether the project needs initialization.
   318→    """
   319→    project_name = validate_project_name(project_name)
   320→    project_dir = _get_project_path(project_name)
   321→
   322→    if not project_dir:
   323→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   324→
   325→    if not project_dir.exists():
   326→        raise HTTPException(status_code=404, detail="Project directory not found")
   327→
   328→    db_file = project_dir / "features.db"
   329→    app_spec = project_dir / "prompts" / "app_spec.txt"
   330→
   331→    # Check if project has spec but no features (needs init)
   332→    has_spec = app_spec.exists()
   333→    has_features = False
   334→    stats = {"pending": 0, "in_progress": 0, "completed": 0, "total": 0}
   335→
   336→    if db_file.exists():
   337→        _, Feature = _get_db_classes()
   338→        try:
   339→            with get_db_session(project_dir) as session:
   340→                all_features = session.query(Feature).all()
   341→                has_features = len(all_features) > 0
   342→
   343→                for f in all_features:
   344→                    stats["total"] += 1
   345→                    if f.passes:
   346→                        stats["completed"] += 1
   347→                    elif f.in_progress:
   348→                        stats["in_progress"] += 1
   349→                    else:
   350→                        stats["pending"] += 1
   351→        except Exception:
   352→            logger.exception("Error getting feature stats")
   353→
   354→    return {
   355→        "has_spec": has_spec,
   356→        "has_features": has_features,
   357→        "needs_init": has_spec and not has_features,
   358→        "stats": stats,
   359→    }
   360→
   361→
   362→@router.patch("/{feature_id}/skip")
   363→async def skip_feature(project_name: str, feature_id: int):
   364→    """
   365→    Mark a feature as skipped by moving it to the end of the priority queue.
   366→
   367→    This doesn't delete the feature but gives it a very high priority number
   368→    so it will be processed last.
   369→    """
   370→    project_name = validate_project_name(project_name)
   371→    project_dir = _get_project_path(project_name)
   372→
   373→    if not project_dir:

@router.post("/reset")
async def reset_features(project_name: str, keep_passing: bool = False):
    """
    Reset all features for a project.

    Args:
        keep_passing: If True, keep features that have already passed

    This is useful when you want to re-initialize the project from the app spec.
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    if not db_file.exists():
        return {"success": True, "message": "No features to reset", "deleted": 0, "kept": 0}

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            if keep_passing:
                # Delete only non-passing features
                deleted = session.query(Feature).filter(Feature.passes == False).delete()
                kept = session.query(Feature).count()
            else:
                # Delete all features
                deleted = session.query(Feature).delete()
                kept = 0

            session.commit()

            return {
                "success": True,
                "message": f"Reset features: {deleted} deleted, {kept} kept",
                "deleted": deleted,
                "kept": kept,
            }
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to reset features")
        raise HTTPException(status_code=500, detail="Failed to reset features")

@router.get("/stats")
async def get_feature_stats(project_name: str):
    """
    Get feature statistics for a project.

    Returns counts of pending, in_progress, and completed features,
    plus info about whether the project needs initialization.
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    app_spec = project_dir / "prompts" / "app_spec.txt"

    # Check if project has spec but no features (needs init)
    has_spec = app_spec.exists()
    has_features = False
    stats = {"pending": 0, "in_progress": 0, "completed": 0, "total": 0}

    if db_file.exists():
        _, Feature = _get_db_classes()
        try:
            with get_db_session(project_dir) as session:
                all_features = session.query(Feature).all()
                has_features = len(all_features) > 0

                for f in all_features:
                    stats["total"] += 1
                    if f.passes:
                        stats["completed"] += 1
                    elif f.in_progress:
                        stats["in_progress"] += 1
                    else:
                        stats["pending"] += 1
        except Exception:
            logger.exception("Error getting feature stats")

    return {
        "has_spec": has_spec,
        "has_features": has_features,
        "needs_init": has_spec and not has_features,
        "stats": stats,
    }

@router.patch("/{feature_id}/skip")
async def skip_feature(project_name: str, feature_id: int):
    """
    Mark a feature as skipped by moving it to the end of the priority queue.

    This doesn't delete the feature but gives it a very high priority number
    so it will be processed last.
    """

"""
Features Router
===============

API endpoints for feature/test case management.
"""

import logging
import re
from contextlib import contextmanager
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import (
    FeatureCreate,
    FeatureListResponse,
    FeatureResponse,
)

# Lazy imports to avoid circular dependencies
_create_database = None
_Feature = None

logger = logging.getLogger(__name__)

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

def _get_db_classes():
    """Lazy import of database classes."""
    global _create_database, _Feature
    if _create_database is None:
        import sys
        from pathlib import Path
        root = Path(__file__).parent.parent.parent
        if str(root) not in sys.path:
            sys.path.insert(0, str(root))
        from api.database import Feature, create_database
        _create_database = create_database
        _Feature = Feature
    return _create_database, _Feature

router = APIRouter(prefix="/api/projects/{project_name}/features", tags=["features"])

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

@contextmanager
def get_db_session(project_dir: Path):
    """
    Context manager for database sessions.
    Ensures session is always closed, even on exceptions.
    """
    create_database, _ = _get_db_classes()
    _, SessionLocal = create_database(project_dir)
    session = SessionLocal()
    try:
        yield session
    finally:
        session.close()

def feature_to_response(f) -> FeatureResponse:
    """Convert a Feature model to a FeatureResponse."""
    return FeatureResponse(
        id=f.id,
        priority=f.priority,
        category=f.category,
        name=f.name,
        description=f.description,
        steps=f.steps if isinstance(f.steps, list) else [],
        passes=f.passes,
        in_progress=f.in_progress,
    )

@router.get("", response_model=FeatureListResponse)
async def list_features(project_name: str):
    """
    List all features for a project organized by status.

    Returns features in three lists:
    - pending: passes=False, not currently being worked on
    - in_progress: features currently being worked on (tracked via agent output)
    - done: passes=True
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    if not db_file.exists():
        return FeatureListResponse(pending=[], in_progress=[], done=[])

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            all_features = session.query(Feature).order_by(Feature.priority).all()

            pending = []
            in_progress = []
            done = []

            for f in all_features:
                feature_response = feature_to_response(f)
                if f.passes:
                    done.append(feature_response)
                elif f.in_progress:
                    in_progress.append(feature_response)
                else:
                    pending.append(feature_response)

            return FeatureListResponse(
                pending=pending,
                in_progress=in_progress,
                done=done,
            )
    except HTTPException:
        raise
    except Exception:
        logger.exception("Database error in list_features")
        raise HTTPException(status_code=500, detail="Database error occurred")

@router.post("", response_model=FeatureResponse)
async def create_feature(project_name: str, feature: FeatureCreate):
    """Create a new feature/test case manually."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            # Get next priority if not specified
            if feature.priority is None:
                max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
                priority = (max_priority.priority + 1) if max_priority else 1
            else:
                priority = feature.priority

            # Create new feature
            db_feature = Feature(
                priority=priority,
                category=feature.category,
                name=feature.name,
                description=feature.description,
                steps=feature.steps,
                passes=False,
            )

            session.add(db_feature)
            session.commit()
            session.refresh(db_feature)

            return feature_to_response(db_feature)
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to create feature")
        raise HTTPException(status_code=500, detail="Failed to create feature")

@router.get("/{feature_id}", response_model=FeatureResponse)
async def get_feature(project_name: str, feature_id: int):
    """Get details of a specific feature."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    if not db_file.exists():
        raise HTTPException(status_code=404, detail="No features database found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            return feature_to_response(feature)
    except HTTPException:
        raise
    except Exception:
        logger.exception("Database error in get_feature")
        raise HTTPException(status_code=500, detail="Database error occurred")

@router.delete("/{feature_id}")
async def delete_feature(project_name: str, feature_id: int):
    """Delete a feature."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            session.delete(feature)
            session.commit()

            return {"success": True, "message": f"Feature {feature_id} deleted"}
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to delete feature")
        raise HTTPException(status_code=500, detail="Failed to delete feature")

@router.patch("/{feature_id}/skip")
async def skip_feature(project_name: str, feature_id: int):
    """
    Mark a feature as skipped by moving it to the end of the priority queue.

    This doesn't delete the feature but gives it a very high priority number
    so it will be processed last.
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            # Set priority to max + 1000 to push to end
            max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
            feature.priority = (max_priority.priority if max_priority else 0) + 1000

            session.commit()

            return {"success": True, "message": f"Feature {feature_id} moved to end of queue"}
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to skip feature")
        raise HTTPException(status_code=500, detail="Failed to skip feature")

+async def reset_features(project_name: str, keep_passing: bool = False):

+        keep_passing: If True, keep features that have already passed

+    This is useful when you want to re-initialize the project from the app spec.

+    project_name = validate_project_name(project_name)

+    project_dir = _get_project_path(project_name)

+        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

+        raise HTTPException(status_code=404, detail="Project directory not found")

+    db_file = project_dir / "features.db"

+        return {"success": True, "message": "No features to reset", "deleted": 0, "kept": 0}

+        with get_db_session(project_dir) as session:

+                # Delete only non-passing features

+                deleted = session.query(Feature).filter(Feature.passes == False).delete()

+                kept = session.query(Feature).count()

+                deleted = session.query(Feature).delete()

+                "message": f"Reset features: {deleted} deleted, {kept} kept",

+        logger.exception("Failed to reset features")

+        raise HTTPException(status_code=500, detail="Failed to reset features")

+async def get_feature_stats(project_name: str):

+    Get feature statistics for a project.

+    Returns counts of pending, in_progress, and completed features,

+    plus info about whether the project needs initialization.

+    db_file = project_dir / "features.db"

+    app_spec = project_dir / "prompts" / "app_spec.txt"

+    # Check if project has spec but no features (needs init)

+    stats = {"pending": 0, "in_progress": 0, "completed": 0, "total": 0}

+                all_features = session.query(Feature).all()

+                has_features = len(all_features) > 0

+                    stats["total"] += 1

+                        stats["completed"] += 1

+                    elif f.in_progress:

+                        stats["in_progress"] += 1

+                        stats["pending"] += 1

+            logger.exception("Error getting feature stats")

+        "needs_init": has_spec and not has_features,


Good, now I need to add an endpoint to reinitialize the project. The key is that when starting the agent with an empty features database, it runs the initializer. So the reinit flow should:

1. Reset features (optionally keep passing)
2. Start the agent (which will detect no features and run initializer)

Let me add a reinit endpoint to the agent router that does this.


Now let me add a reinit endpoint to the agent router.


     1→"""
     2→Agent Router
     3→============
     4→
     5→API endpoints for agent control (start/stop/pause/resume).
     6→Uses project registry for path lookups.
     7→"""
     8→
     9→import re
    10→from pathlib import Path
    11→
    12→from fastapi import APIRouter, HTTPException
    13→
    14→from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
    15→from ..services.process_manager import get_manager
    16→
    17→
    18→def _get_project_path(project_name: str) -> Path:
    19→    """Get project path from registry."""
    20→    import sys
    21→    root = Path(__file__).parent.parent.parent
    22→    if str(root) not in sys.path:
    23→        sys.path.insert(0, str(root))
    24→
    25→    from registry import get_project_path
    26→    return get_project_path(project_name)
    27→
    28→
    29→router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])
    30→
    31→# Root directory for process manager
    32→ROOT_DIR = Path(__file__).parent.parent.parent
    33→
    34→
    35→def validate_project_name(name: str) -> str:
    36→    """Validate and sanitize project name to prevent path traversal."""
    37→    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
    38→        raise HTTPException(
    39→            status_code=400,
    40→            detail="Invalid project name"
    41→        )
    42→    return name
    43→
    44→
    45→def get_project_manager(project_name: str):
    46→    """Get the process manager for a project."""
    47→    project_name = validate_project_name(project_name)
    48→    project_dir = _get_project_path(project_name)
    49→
    50→    if not project_dir:
    51→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
    52→
    53→    if not project_dir.exists():
    54→        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")
    55→
    56→    return get_manager(project_name, project_dir, ROOT_DIR)
    57→
    58→
    59→@router.get("/status", response_model=AgentStatus)
    60→async def get_agent_status(project_name: str):
    61→    """Get the current status of the agent for a project."""
    62→    manager = get_project_manager(project_name)
    63→
    64→    # Run healthcheck to detect crashed processes
    65→    await manager.healthcheck()
    66→
    67→    return AgentStatus(
    68→        status=manager.status,
    69→        pid=manager.pid,
    70→        started_at=manager.started_at,
    71→        yolo_mode=manager.yolo_mode,
    72→    )
    73→
    74→
    75→@router.post("/start", response_model=AgentActionResponse)
    76→async def start_agent(
    77→    project_name: str,
    78→    request: AgentStartRequest = AgentStartRequest(),
    79→):
    80→    """Start the agent for a project."""
    81→    manager = get_project_manager(project_name)
    82→
    83→    success, message = await manager.start(yolo_mode=request.yolo_mode)
    84→
    85→    return AgentActionResponse(
    86→        success=success,
    87→        status=manager.status,
    88→        message=message,
    89→    )
    90→
    91→
    92→@router.post("/stop", response_model=AgentActionResponse)
    93→async def stop_agent(project_name: str):
    94→    """Stop the agent for a project."""
    95→    manager = get_project_manager(project_name)
    96→
    97→    success, message = await manager.stop()
    98→
    99→    return AgentActionResponse(
   100→        success=success,
   101→        status=manager.status,
   102→        message=message,
   103→    )
   104→
   105→
   106→@router.post("/pause", response_model=AgentActionResponse)
   107→async def pause_agent(project_name: str):
   108→    """Pause the agent for a project."""
   109→    manager = get_project_manager(project_name)
   110→
   111→    success, message = await manager.pause()
   112→
   113→    return AgentActionResponse(
   114→        success=success,
   115→        status=manager.status,
   116→        message=message,
   117→    )
   118→
   119→
   120→@router.post("/resume", response_model=AgentActionResponse)
   121→async def resume_agent(project_name: str):
   122→    """Resume a paused agent."""
   123→    manager = get_project_manager(project_name)
   124→
   125→    success, message = await manager.resume()
   126→
   127→    return AgentActionResponse(
   128→        success=success,
   129→        status=manager.status,
   130→        message=message,
   131→    )
   132→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Agent Router
============

API endpoints for agent control (start/stop/pause/resume).
Uses project registry for path lookups.
"""

import re
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
from ..services.process_manager import get_manager

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])

# Root directory for process manager
ROOT_DIR = Path(__file__).parent.parent.parent

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

def get_project_manager(project_name: str):
    """Get the process manager for a project."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")

    return get_manager(project_name, project_dir, ROOT_DIR)

@router.get("/status", response_model=AgentStatus)
async def get_agent_status(project_name: str):
    """Get the current status of the agent for a project."""
    manager = get_project_manager(project_name)

    # Run healthcheck to detect crashed processes
    await manager.healthcheck()

    return AgentStatus(
        status=manager.status,
        pid=manager.pid,
        started_at=manager.started_at,
        yolo_mode=manager.yolo_mode,
    )

@router.post("/start", response_model=AgentActionResponse)
async def start_agent(
    project_name: str,
    request: AgentStartRequest = AgentStartRequest(),
):
    """Start the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/stop", response_model=AgentActionResponse)
async def stop_agent(project_name: str):
    """Stop the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.stop()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/pause", response_model=AgentActionResponse)
async def pause_agent(project_name: str):
    """Pause the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.pause()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )


Now I need to add a reinit endpoint that:1. Stops any running agent2. Resets features (optionally keeping passing ones)
3. Starts the agent (which will run initializer since no features exist)


Edit

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

class ReinitRequest(BaseModel):
    """Request for re-initialization."""
    keep_passing: bool = False
    yolo_mode: bool = False

@router.post("/reinit", response_model=AgentActionResponse)
async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):
    """
    Re-initialize a project by resetting features and running the initializer.

    This is useful when:
    - The project was imported but never initialized (0/0 features)
    - You want to re-scan the app spec and regenerate features
    - You want to reset failed features and try again

    Args:
        keep_passing: If True, keep features that have already passed
        yolo_mode: If True, run in YOLO mode (no browser testing)

    Flow:
    1. Stop any running agent
    2. Reset features database (optionally keeping passing features)
    3. Start the agent (which will detect no/few features and run initializer)
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    # Check for app spec
    app_spec = project_dir / "prompts" / "app_spec.txt"
    if not app_spec.exists():
        raise HTTPException(
            status_code=400,
            detail="No app_spec.txt found. Create or import a spec first."
        )

    manager = get_project_manager(project_name)

    # Step 1: Stop any running agent
    if manager.status in ("running", "paused"):
        await manager.stop()

    # Step 2: Reset features
    db_file = project_dir / "features.db"
    deleted = 0
    kept = 0

    if db_file.exists():
        import sys
        root = Path(__file__).parent.parent.parent
        if str(root) not in sys.path:
            sys.path.insert(0, str(root))

        from api.database import Feature, create_database
        _, SessionLocal = create_database(project_dir)
        session = SessionLocal()

        try:
            if request.keep_passing:
                deleted = session.query(Feature).filter(Feature.passes == False).delete()
                kept = session.query(Feature).count()
            else:
                deleted = session.query(Feature).delete()
                kept = 0
            session.commit()
        finally:
            session.close()

    # Step 3: Start the agent (will run initializer since features are empty/reset)
    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=f"Re-initialized: {deleted} features reset, {kept} kept. {message}",
    )


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\server\routers\agent.py has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
   116→        message=message,
   117→    )
   118→
   119→
   120→@router.post("/resume", response_model=AgentActionResponse)
   121→async def resume_agent(project_name: str):
   122→    """Resume a paused agent."""
   123→    manager = get_project_manager(project_name)
   124→
   125→    success, message = await manager.resume()
   126→
   127→    return AgentActionResponse(
   128→        success=success,
   129→        status=manager.status,
   130→        message=message,
   131→    )
   132→
   133→
   134→class ReinitRequest(BaseModel):
   135→    """Request for re-initialization."""
   136→    keep_passing: bool = False
   137→    yolo_mode: bool = False
   138→
   139→
   140→@router.post("/reinit", response_model=AgentActionResponse)
   141→async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):
   142→    """
   143→    Re-initialize a project by resetting features and running the initializer.
   144→
   145→    This is useful when:
   146→    - The project was imported but never initialized (0/0 features)
   147→    - You want to re-scan the app spec and regenerate features
   148→    - You want to reset failed features and try again
   149→
   150→    Args:
   151→        keep_passing: If True, keep features that have already passed
   152→        yolo_mode: If True, run in YOLO mode (no browser testing)
   153→
   154→    Flow:
   155→    1. Stop any running agent
   156→    2. Reset features database (optionally keeping passing features)
   157→    3. Start the agent (which will detect no/few features and run initializer)
   158→    """
   159→    project_name = validate_project_name(project_name)
   160→    project_dir = _get_project_path(project_name)
   161→
   162→    if not project_dir:
   163→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   164→
   165→    if not project_dir.exists():
   166→        raise HTTPException(status_code=404, detail="Project directory not found")
   167→
   168→    # Check for app spec
   169→    app_spec = project_dir / "prompts" / "app_spec.txt"
   170→    if not app_spec.exists():
   171→        raise HTTPException(
   172→            status_code=400,
   173→            detail="No app_spec.txt found. Create or import a spec first."
   174→        )
   175→
   176→    manager = get_project_manager(project_name)
   177→
   178→    # Step 1: Stop any running agent
   179→    if manager.status in ("running", "paused"):
   180→        await manager.stop()
   181→
   182→    # Step 2: Reset features
   183→    db_file = project_dir / "features.db"
   184→    deleted = 0
   185→    kept = 0
   186→
   187→    if db_file.exists():
   188→        import sys
   189→        root = Path(__file__).parent.parent.parent
   190→        if str(root) not in sys.path:
   191→            sys.path.insert(0, str(root))
   192→
   193→        from api.database import Feature, create_database
   194→        _, SessionLocal = create_database(project_dir)
   195→        session = SessionLocal()
   196→
   197→        try:
   198→            if request.keep_passing:
   199→                deleted = session.query(Feature).filter(Feature.passes == False).delete()
   200→                kept = session.query(Feature).count()
   201→            else:
   202→                deleted = session.query(Feature).delete()
   203→                kept = 0
   204→            session.commit()
   205→        finally:
   206→            session.close()
   207→
   208→    # Step 3: Start the agent (will run initializer since features are empty/reset)
   209→    success, message = await manager.start(yolo_mode=request.yolo_mode)
   210→
   211→    return AgentActionResponse(
   212→        success=success,
   213→        status=manager.status,
   214→        message=f"Re-initialized: {deleted} features reset, {kept} kept. {message}",
   215→    )
   216→

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

class ReinitRequest(BaseModel):
    """Request for re-initialization."""
    keep_passing: bool = False
    yolo_mode: bool = False

@router.post("/reinit", response_model=AgentActionResponse)
async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):
    """
    Re-initialize a project by resetting features and running the initializer.

    This is useful when:
    - The project was imported but never initialized (0/0 features)
    - You want to re-scan the app spec and regenerate features
    - You want to reset failed features and try again

    Args:
        keep_passing: If True, keep features that have already passed
        yolo_mode: If True, run in YOLO mode (no browser testing)

    Flow:
    1. Stop any running agent
    2. Reset features database (optionally keeping passing features)
    3. Start the agent (which will detect no/few features and run initializer)
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    # Check for app spec
    app_spec = project_dir / "prompts" / "app_spec.txt"
    if not app_spec.exists():
        raise HTTPException(
            status_code=400,
            detail="No app_spec.txt found. Create or import a spec first."
        )

    manager = get_project_manager(project_name)

    # Step 1: Stop any running agent
    if manager.status in ("running", "paused"):
        await manager.stop()

    # Step 2: Reset features
    db_file = project_dir / "features.db"
    deleted = 0
    kept = 0

    if db_file.exists():
        import sys
        root = Path(__file__).parent.parent.parent
        if str(root) not in sys.path:
            sys.path.insert(0, str(root))

        from api.database import Feature, create_database
        _, SessionLocal = create_database(project_dir)
        session = SessionLocal()

        try:
            if request.keep_passing:
                deleted = session.query(Feature).filter(Feature.passes == False).delete()
                kept = session.query(Feature).count()
            else:
                deleted = session.query(Feature).delete()
                kept = 0
            session.commit()
        finally:
            session.close()

    # Step 3: Start the agent (will run initializer since features are empty/reset)
    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=f"Re-initialized: {deleted} features reset, {kept} kept. {message}",
    )

"""
Agent Router
============

API endpoints for agent control (start/stop/pause/resume).
Uses project registry for path lookups.
"""

import re
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
from ..services.process_manager import get_manager

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])

# Root directory for process manager
ROOT_DIR = Path(__file__).parent.parent.parent

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

def get_project_manager(project_name: str):
    """Get the process manager for a project."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")

    return get_manager(project_name, project_dir, ROOT_DIR)

@router.get("/status", response_model=AgentStatus)
async def get_agent_status(project_name: str):
    """Get the current status of the agent for a project."""
    manager = get_project_manager(project_name)

    # Run healthcheck to detect crashed processes
    await manager.healthcheck()

    return AgentStatus(
        status=manager.status,
        pid=manager.pid,
        started_at=manager.started_at,
        yolo_mode=manager.yolo_mode,
    )

@router.post("/start", response_model=AgentActionResponse)
async def start_agent(
    project_name: str,
    request: AgentStartRequest = AgentStartRequest(),
):
    """Start the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/stop", response_model=AgentActionResponse)
async def stop_agent(project_name: str):
    """Stop the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.stop()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/pause", response_model=AgentActionResponse)
async def pause_agent(project_name: str):
    """Pause the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.pause()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

+    """Request for re-initialization."""

+async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):

+    Re-initialize a project by resetting features and running the initializer.

+    - The project was imported but never initialized (0/0 features)

+    - You want to re-scan the app spec and regenerate features

+    - You want to reset failed features and try again

+        keep_passing: If True, keep features that have already passed

+        yolo_mode: If True, run in YOLO mode (no browser testing)

+    2. Reset features database (optionally keeping passing features)

+    3. Start the agent (which will detect no/few features and run initializer)

+    project_name = validate_project_name(project_name)

+    project_dir = _get_project_path(project_name)

+        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

+        raise HTTPException(status_code=404, detail="Project directory not found")

+    app_spec = project_dir / "prompts" / "app_spec.txt"

+            detail="No app_spec.txt found. Create or import a spec first."

+    manager = get_project_manager(project_name)

+    if manager.status in ("running", "paused"):

+    db_file = project_dir / "features.db"

+        root = Path(__file__).parent.parent.parent

+            sys.path.insert(0, str(root))

+        from api.database import Feature, create_database

+        _, SessionLocal = create_database(project_dir)

+                deleted = session.query(Feature).filter(Feature.passes == False).delete()

+                kept = session.query(Feature).count()

+                deleted = session.query(Feature).delete()

+    # Step 3: Start the agent (will run initializer since features are empty/reset)

+    success, message = await manager.start(yolo_mode=request.yolo_mode)

+        message=f"Re-initialized: {deleted} features reset, {kept} kept. {message}",


I need to add the import for BaseModel at the top of the file.


from fastapi import APIRouter, HTTPException

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus

from fastapi import APIRouter, HTTPException
from pydantic import BaseModel

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus


The file C:\Users\MikeSwanson\claude-projects\Autocode-remix\Autocoder-2.0\server\routers\agent.py has been updated. Here's the result of running `cat -n` on a snippet of the edited file:
     8→
     9→import re
    10→from pathlib import Path
    11→
    12→from fastapi import APIRouter, HTTPException
    13→from pydantic import BaseModel
    14→
    15→from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
    16→from ..services.process_manager import get_manager
    17→
    18→
    19→def _get_project_path(project_name: str) -> Path:

from fastapi import APIRouter, HTTPException
from pydantic import BaseModel

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus

"""
Agent Router
============

API endpoints for agent control (start/stop/pause/resume).
Uses project registry for path lookups.
"""

import re
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
from ..services.process_manager import get_manager

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])

# Root directory for process manager
ROOT_DIR = Path(__file__).parent.parent.parent

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

def get_project_manager(project_name: str):
    """Get the process manager for a project."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")

    return get_manager(project_name, project_dir, ROOT_DIR)

@router.get("/status", response_model=AgentStatus)
async def get_agent_status(project_name: str):
    """Get the current status of the agent for a project."""
    manager = get_project_manager(project_name)

    # Run healthcheck to detect crashed processes
    await manager.healthcheck()

    return AgentStatus(
        status=manager.status,
        pid=manager.pid,
        started_at=manager.started_at,
        yolo_mode=manager.yolo_mode,
    )

@router.post("/start", response_model=AgentActionResponse)
async def start_agent(
    project_name: str,
    request: AgentStartRequest = AgentStartRequest(),
):
    """Start the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/stop", response_model=AgentActionResponse)
async def stop_agent(project_name: str):
    """Stop the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.stop()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/pause", response_model=AgentActionResponse)
async def pause_agent(project_name: str):
    """Pause the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.pause()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

class ReinitRequest(BaseModel):
    """Request for re-initialization."""
    keep_passing: bool = False
    yolo_mode: bool = False

@router.post("/reinit", response_model=AgentActionResponse)
async def reinit_project(project_name: str, request: ReinitRequest = ReinitRequest()):
    """
    Re-initialize a project by resetting features and running the initializer.

    This is useful when:
    - The project was imported but never initialized (0/0 features)
    - You want to re-scan the app spec and regenerate features
    - You want to reset failed features and try again

    Args:
        keep_passing: If True, keep features that have already passed
        yolo_mode: If True, run in YOLO mode (no browser testing)

    Flow:
    1. Stop any running agent
    2. Reset features database (optionally keeping passing features)
    3. Start the agent (which will detect no/few features and run initializer)
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    # Check for app spec
    app_spec = project_dir / "prompts" / "app_spec.txt"
    if not app_spec.exists():
        raise HTTPException(
            status_code=400,
            detail="No app_spec.txt found. Create or import a spec first."
        )

    manager = get_project_manager(project_name)

    # Step 1: Stop any running agent
    if manager.status in ("running", "paused"):
        await manager.stop()

    # Step 2: Reset features
    db_file = project_dir / "features.db"
    deleted = 0
    kept = 0

    if db_file.exists():
        import sys
        root = Path(__file__).parent.parent.parent
        if str(root) not in sys.path:
            sys.path.insert(0, str(root))

        from api.database import Feature, create_database
        _, SessionLocal = create_database(project_dir)
        session = SessionLocal()

        try:
            if request.keep_passing:
                deleted = session.query(Feature).filter(Feature.passes == False).delete()
                kept = session.query(Feature).count()
            else:
                deleted = session.query(Feature).delete()
                kept = 0
            session.commit()
        finally:
            session.close()

    # Step 3: Start the agent (will run initializer since features are empty/reset)
    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=f"Re-initialized: {deleted} features reset, {kept} kept. {message}",
    )


Now let me update the todo list and add a button to the UI. First, let me look at the UI to see how buttons are added for agent controls.


TodoWrite

Add re-init endpoint to features router

Add re-init button to UI

Update APP_SPEC with re-init feature


Todos have been modified successfully. Ensure that you continue to use the todo list to track your progress. Please proceed with the current tasks if applicable

Add re-init endpoint to features router

Add re-init button to UI

Update APP_SPEC with re-init feature

Add re-init endpoint to features router

Add re-init button to UI

Update APP_SPEC with re-init feature


Let me find the AgentControls component to add the re-init button.


<tool_use_error>File does not exist.</tool_use_error>


Let me search for agent controls in the codebase.


Found 2 files
Autocode-remix\Autocoder-2.0\ui\src\components\NewProjectModal.tsx
Autocode-remix\Autocoder-2.0\ui\src\components\AgentControl.tsx


1→import { useState } from 'react'
     2→import { Play, Pause, Square, Loader2, Zap } from 'lucide-react'
     3→import {
     4→  useStartAgent,
     5→  useStopAgent,
     6→  usePauseAgent,
     7→  useResumeAgent,
     8→} from '../hooks/useProjects'
     9→import type { AgentStatus } from '../lib/types'
    10→
    11→interface AgentControlProps {
    12→  projectName: string
    13→  status: AgentStatus
    14→  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
    15→}
    16→
    17→export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
    18→  const [yoloEnabled, setYoloEnabled] = useState(false)
    19→
    20→  const startAgent = useStartAgent(projectName)
    21→  const stopAgent = useStopAgent(projectName)
    22→  const pauseAgent = usePauseAgent(projectName)
    23→  const resumeAgent = useResumeAgent(projectName)
    24→
    25→  const isLoading =
    26→    startAgent.isPending ||
    27→    stopAgent.isPending ||
    28→    pauseAgent.isPending ||
    29→    resumeAgent.isPending
    30→
    31→  const handleStart = () => startAgent.mutate(yoloEnabled)
    32→  const handleStop = () => stopAgent.mutate()
    33→  const handlePause = () => pauseAgent.mutate()
    34→  const handleResume = () => resumeAgent.mutate()
    35→
    36→  return (
    37→

    38→      {/* Status Indicator */}
    39→      <StatusIndicator status={status} />
    40→
    41→      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
    42→      {(status === 'running' || status === 'paused') && yoloMode && (
    43→

    44→          <Zap size={14} className="text-yellow-900" />
    45→
    46→            YOLO
    47→
    48→

    49→      )}
    50→
    51→      {/* Control Buttons */}
    52→

    53→        {status === 'stopped' || status === 'crashed' ? (
    54→          <>
    55→            {/* YOLO Toggle - only shown when stopped */}
    56→            <button
    57→              onClick={() => setYoloEnabled(!yoloEnabled)}
    58→              className={`neo-btn text-sm py-2 px-3 ${
    59→                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
    60→              }`}
    61→              title="YOLO Mode: Skip testing for rapid prototyping"
    62→            >
    63→              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
    64→            </button>
    65→            <button
    66→              onClick={handleStart}
    67→              disabled={isLoading}
    68→              className="neo-btn neo-btn-success text-sm py-2 px-3"
    69→              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
    70→            >
    71→              {isLoading ? (
    72→                <Loader2 size={18} className="animate-spin" />
    73→              ) : (
    74→                <Play size={18} />
    75→              )}
    76→            </button>
    77→          </>
    78→        ) : status === 'running' ? (
    79→          <>
    80→            <button
    81→              onClick={handlePause}
    82→              disabled={isLoading}
    83→              className="neo-btn neo-btn-warning text-sm py-2 px-3"
    84→              title="Pause Agent"
    85→            >
    86→              {isLoading ? (
    87→                <Loader2 size={18} className="animate-spin" />
    88→              ) : (
    89→                <Pause size={18} />
    90→              )}
    91→            </button>
    92→            <button
    93→              onClick={handleStop}
    94→              disabled={isLoading}
    95→              className="neo-btn neo-btn-danger text-sm py-2 px-3"
    96→              title="Stop Agent"
    97→            >
    98→              <Square size={18} />
    99→            </button>
   100→          </>
   101→        ) : status === 'paused' ? (
   102→          <>
   103→            <button
   104→              onClick={handleResume}
   105→              disabled={isLoading}
   106→              className="neo-btn neo-btn-success text-sm py-2 px-3"
   107→              title="Resume Agent"
   108→            >
   109→              {isLoading ? (
   110→                <Loader2 size={18} className="animate-spin" />
   111→              ) : (
   112→                <Play size={18} />
   113→              )}
   114→            </button>
   115→            <button
   116→              onClick={handleStop}
   117→              disabled={isLoading}
   118→              className="neo-btn neo-btn-danger text-sm py-2 px-3"
   119→              title="Stop Agent"
   120→            >
   121→              <Square size={18} />
   122→            </button>
   123→          </>
   124→        ) : null}
   125→

   126→

   127→  )
   128→}
   129→
   130→function StatusIndicator({ status }: { status: AgentStatus }) {
   131→  const statusConfig = {
   132→    stopped: {
   133→      color: 'var(--color-neo-text-secondary)',
   134→      label: 'Stopped',
   135→      pulse: false,
   136→    },
   137→    running: {
   138→      color: 'var(--color-neo-done)',
   139→      label: 'Running',
   140→      pulse: true,
   141→    },
   142→    paused: {
   143→      color: 'var(--color-neo-pending)',
   144→      label: 'Paused',
   145→      pulse: false,
   146→    },
   147→    crashed: {
   148→      color: 'var(--color-neo-danger)',
   149→      label: 'Crashed',
   150→      pulse: true,
   151→    },
   152→  }
   153→
   154→  const config = statusConfig[status]
   155→
   156→  return (
   157→

   158→      <span
   159→        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
   160→        style={{ backgroundColor: config.color }}
   161→      />
   162→
   166→        {config.label}
   167→
   168→

   169→  )
   170→}
   171→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

import { useState } from 'react'
import { Play, Pause, Square, Loader2, Zap } from 'lucide-react'
import {
  useStartAgent,
  useStopAgent,
  usePauseAgent,
  useResumeAgent,
} from '../hooks/useProjects'
import type { AgentStatus } from '../lib/types'

interface AgentControlProps {
  projectName: string
  status: AgentStatus
  yoloMode?: boolean  // From server status - whether currently running in YOLO mode
}

export function AgentControl({ projectName, status, yoloMode = false }: AgentControlProps) {
  const [yoloEnabled, setYoloEnabled] = useState(false)

  const startAgent = useStartAgent(projectName)
  const stopAgent = useStopAgent(projectName)
  const pauseAgent = usePauseAgent(projectName)
  const resumeAgent = useResumeAgent(projectName)

  const isLoading =
    startAgent.isPending ||
    stopAgent.isPending ||
    pauseAgent.isPending ||
    resumeAgent.isPending

  const handleStart = () => startAgent.mutate(yoloEnabled)
  const handleStop = () => stopAgent.mutate()
  const handlePause = () => pauseAgent.mutate()
  const handleResume = () => resumeAgent.mutate()

  return (

      {/* Status Indicator */}
      <StatusIndicator status={status} />

      {/* YOLO Mode Indicator - shown when running in YOLO mode */}
      {(status === 'running' || status === 'paused') && yoloMode && (

          <Zap size={14} className="text-yellow-900" />

            YOLO

      )}

      {/* Control Buttons */}

        {status === 'stopped' || status === 'crashed' ? (
          <>
            {/* YOLO Toggle - only shown when stopped */}
            <button
              onClick={() => setYoloEnabled(!yoloEnabled)}
              className={`neo-btn text-sm py-2 px-3 ${
                yoloEnabled ? 'neo-btn-warning' : 'neo-btn-secondary'
              }`}
              title="YOLO Mode: Skip testing for rapid prototyping"
            >
              <Zap size={18} className={yoloEnabled ? 'text-yellow-900' : ''} />
            </button>
            <button
              onClick={handleStart}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title={yoloEnabled ? "Start Agent (YOLO Mode)" : "Start Agent"}
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
          </>
        ) : status === 'running' ? (
          <>
            <button
              onClick={handlePause}
              disabled={isLoading}
              className="neo-btn neo-btn-warning text-sm py-2 px-3"
              title="Pause Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Pause size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : status === 'paused' ? (
          <>
            <button
              onClick={handleResume}
              disabled={isLoading}
              className="neo-btn neo-btn-success text-sm py-2 px-3"
              title="Resume Agent"
            >
              {isLoading ? (
                <Loader2 size={18} className="animate-spin" />
              ) : (
                <Play size={18} />
              )}
            </button>
            <button
              onClick={handleStop}
              disabled={isLoading}
              className="neo-btn neo-btn-danger text-sm py-2 px-3"
              title="Stop Agent"
            >
              <Square size={18} />
            </button>
          </>
        ) : null}

  )
}

function StatusIndicator({ status }: { status: AgentStatus }) {
  const statusConfig = {
    stopped: {
      color: 'var(--color-neo-text-secondary)',
      label: 'Stopped',
      pulse: false,
    },
    running: {
      color: 'var(--color-neo-done)',
      label: 'Running',
      pulse: true,
    },
    paused: {
      color: 'var(--color-neo-pending)',
      label: 'Paused',
      pulse: false,
    },
    crashed: {
      color: 'var(--color-neo-danger)',
      label: 'Crashed',
      pulse: true,
    },
  }

  const config = statusConfig[status]

  return (

      <span
        className={`w-3 h-3 rounded-full ${config.pulse ? 'animate-pulse' : ''}`}
        style={{ backgroundColor: config.color }}
      />

        {config.label}

  )
}


I see the AgentControl component. It needs to have access to feature stats to determine if reinit is needed. Let me also check the useProjects hook to see how the mutations are set up, and then add the reinit mutation and update the component.


     1→/**
     2→ * React Query hooks for project data
     3→ */
     4→
     5→import { useQuery, useMutation, useQueryClient } from '@tanstack/react-query'
     6→import * as api from '../lib/api'
     7→import type { FeatureCreate, ReferenceFolderCreate, ReferenceFolderUpdate } from '../lib/types'
     8→
     9→// ============================================================================
    10→// Projects
    11→// ============================================================================
    12→
    13→export function useProjects() {
    14→  return useQuery({
    15→    queryKey: ['projects'],
    16→    queryFn: api.listProjects,
    17→  })
    18→}
    19→
    20→export function useProject(name: string | null) {
    21→  return useQuery({
    22→    queryKey: ['project', name],
    23→    queryFn: () => api.getProject(name!),
    24→    enabled: !!name,
    25→  })
    26→}
    27→
    28→export function useCreateProject() {
    29→  const queryClient = useQueryClient()
    30→
    31→  return useMutation({
    32→    mutationFn: ({ name, path, specMethod }: { name: string; path: string; specMethod?: 'claude' | 'manual' }) =>
    33→      api.createProject(name, path, specMethod),
    34→    onSuccess: () => {
    35→      queryClient.invalidateQueries({ queryKey: ['projects'] })
    36→    },
    37→  })
    38→}
    39→
    40→export function useDeleteProject() {
    41→  const queryClient = useQueryClient()
    42→
    43→  return useMutation({
    44→    mutationFn: ({ name, deleteFiles = false }: { name: string; deleteFiles?: boolean }) =>
    45→      api.deleteProject(name, deleteFiles),
    46→    onSuccess: () => {
    47→      queryClient.invalidateQueries({ queryKey: ['projects'] })
    48→    },
    49→  })
    50→}
    51→
    52→export function useImportProject() {
    53→  const queryClient = useQueryClient()
    54→
    55→  return useMutation({
    56→    mutationFn: ({ name, path }: { name: string; path: string }) =>
    57→      api.importProject(name, path),
    58→    onSuccess: () => {
    59→      queryClient.invalidateQueries({ queryKey: ['projects'] })
    60→    },
    61→  })
    62→}
    63→
    64→// ============================================================================
    65→// Features
    66→// ============================================================================
    67→
    68→export function useFeatures(projectName: string | null) {
    69→  return useQuery({
    70→    queryKey: ['features', projectName],
    71→    queryFn: () => api.listFeatures(projectName!),
    72→    enabled: !!projectName,
    73→    refetchInterval: 5000, // Refetch every 5 seconds for real-time updates
    74→  })
    75→}
    76→
    77→export function useCreateFeature(projectName: string) {
    78→  const queryClient = useQueryClient()
    79→
    80→  return useMutation({
    81→    mutationFn: (feature: FeatureCreate) => api.createFeature(projectName, feature),
    82→    onSuccess: () => {
    83→      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    84→    },
    85→  })
    86→}
    87→
    88→export function useDeleteFeature(projectName: string) {
    89→  const queryClient = useQueryClient()
    90→
    91→  return useMutation({
    92→    mutationFn: (featureId: number) => api.deleteFeature(projectName, featureId),
    93→    onSuccess: () => {
    94→      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    95→    },
    96→  })
    97→}
    98→
    99→export function useSkipFeature(projectName: string) {
   100→  const queryClient = useQueryClient()
   101→
   102→  return useMutation({
   103→    mutationFn: (featureId: number) => api.skipFeature(projectName, featureId),
   104→    onSuccess: () => {
   105→      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
   106→    },
   107→  })
   108→}
   109→
   110→// ============================================================================
   111→// Agent
   112→// ============================================================================
   113→
   114→export function useAgentStatus(projectName: string | null) {
   115→  return useQuery({
   116→    queryKey: ['agent-status', projectName],
   117→    queryFn: () => api.getAgentStatus(projectName!),
   118→    enabled: !!projectName,
   119→    refetchInterval: 3000, // Poll every 3 seconds
   120→  })
   121→}
   122→
   123→export function useStartAgent(projectName: string) {
   124→  const queryClient = useQueryClient()
   125→
   126→  return useMutation({
   127→    mutationFn: (yoloMode: boolean = false) => api.startAgent(projectName, yoloMode),
   128→    onSuccess: () => {
   129→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   130→    },
   131→  })
   132→}
   133→
   134→export function useStopAgent(projectName: string) {
   135→  const queryClient = useQueryClient()
   136→
   137→  return useMutation({
   138→    mutationFn: () => api.stopAgent(projectName),
   139→    onSuccess: () => {
   140→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   141→    },
   142→  })
   143→}
   144→
   145→export function usePauseAgent(projectName: string) {
   146→  const queryClient = useQueryClient()
   147→
   148→  return useMutation({
   149→    mutationFn: () => api.pauseAgent(projectName),
   150→    onSuccess: () => {
   151→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   152→    },
   153→  })
   154→}
   155→
   156→export function useResumeAgent(projectName: string) {
   157→  const queryClient = useQueryClient()
   158→
   159→  return useMutation({
   160→    mutationFn: () => api.resumeAgent(projectName),
   161→    onSuccess: () => {
   162→      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
   163→    },
   164→  })
   165→}
   166→
   167→// ============================================================================
   168→// Setup
   169→// ============================================================================
   170→
   171→export function useSetupStatus() {
   172→  return useQuery({
   173→    queryKey: ['setup-status'],
   174→    queryFn: api.getSetupStatus,
   175→    staleTime: 60000, // Cache for 1 minute
   176→  })
   177→}
   178→
   179→export function useHealthCheck() {
   180→  return useQuery({
   181→    queryKey: ['health'],
   182→    queryFn: api.healthCheck,
   183→    retry: false,
   184→  })
   185→}
   186→
   187→// ============================================================================
   188→// Filesystem
   189→// ============================================================================
   190→
   191→export function useListDirectory(path?: string) {
   192→  return useQuery({
   193→    queryKey: ['filesystem', 'list', path],
   194→    queryFn: () => api.listDirectory(path),
   195→  })
   196→}
   197→
   198→export function useCreateDirectory() {
   199→  const queryClient = useQueryClient()
   200→
   201→  return useMutation({
   202→    mutationFn: (path: string) => api.createDirectory(path),
   203→    onSuccess: (_, path) => {
   204→      // Invalidate parent directory listing
   205→      const parentPath = path.split('/').slice(0, -1).join('/') || undefined
   206→      queryClient.invalidateQueries({ queryKey: ['filesystem', 'list', parentPath] })
   207→    },
   208→  })
   209→}
   210→
   211→export function useValidatePath() {
   212→  return useMutation({
   213→    mutationFn: (path: string) => api.validatePath(path),
   214→  })
   215→}
   216→
   217→// ============================================================================
   218→// Reference Folders
   219→// ============================================================================
   220→
   221→export function useReferences(projectName: string | null) {
   222→  return useQuery({
   223→    queryKey: ['references', projectName],
   224→    queryFn: () => api.listReferences(projectName!),
   225→    enabled: !!projectName,
   226→  })
   227→}
   228→
   229→export function useAddReference(projectName: string) {
   230→  const queryClient = useQueryClient()
   231→
   232→  return useMutation({
   233→    mutationFn: (data: ReferenceFolderCreate) => api.addReference(projectName, data),
   234→    onSuccess: () => {
   235→      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
   236→    },
   237→  })
   238→}
   239→
   240→export function useRemoveReference(projectName: string) {
   241→  const queryClient = useQueryClient()
   242→
   243→  return useMutation({
   244→    mutationFn: (referenceId: number) => api.removeReference(projectName, referenceId),
   245→    onSuccess: () => {
   246→      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
   247→    },
   248→  })
   249→}
   250→
   251→export function useUpdateReference(projectName: string) {
   252→  const queryClient = useQueryClient()
   253→
   254→  return useMutation({
   255→    mutationFn: ({ id, data }: { id: number; data: ReferenceFolderUpdate }) =>
   256→      api.updateReference(projectName, id, data),
   257→    onSuccess: () => {
   258→      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
   259→    },
   260→  })
   261→}
   262→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

/**
 * React Query hooks for project data
 */

import { useQuery, useMutation, useQueryClient } from '@tanstack/react-query'
import * as api from '../lib/api'
import type { FeatureCreate, ReferenceFolderCreate, ReferenceFolderUpdate } from '../lib/types'

// ============================================================================
// Projects
// ============================================================================

export function useProjects() {
  return useQuery({
    queryKey: ['projects'],
    queryFn: api.listProjects,
  })
}

export function useProject(name: string | null) {
  return useQuery({
    queryKey: ['project', name],
    queryFn: () => api.getProject(name!),
    enabled: !!name,
  })
}

export function useCreateProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, path, specMethod }: { name: string; path: string; specMethod?: 'claude' | 'manual' }) =>
      api.createProject(name, path, specMethod),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

export function useDeleteProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, deleteFiles = false }: { name: string; deleteFiles?: boolean }) =>
      api.deleteProject(name, deleteFiles),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

export function useImportProject() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ name, path }: { name: string; path: string }) =>
      api.importProject(name, path),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['projects'] })
    },
  })
}

// ============================================================================
// Features
// ============================================================================

export function useFeatures(projectName: string | null) {
  return useQuery({
    queryKey: ['features', projectName],
    queryFn: () => api.listFeatures(projectName!),
    enabled: !!projectName,
    refetchInterval: 5000, // Refetch every 5 seconds for real-time updates
  })
}

export function useCreateFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (feature: FeatureCreate) => api.createFeature(projectName, feature),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

export function useDeleteFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (featureId: number) => api.deleteFeature(projectName, featureId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

export function useSkipFeature(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (featureId: number) => api.skipFeature(projectName, featureId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['features', projectName] })
    },
  })
}

// ============================================================================
// Agent
// ============================================================================

export function useAgentStatus(projectName: string | null) {
  return useQuery({
    queryKey: ['agent-status', projectName],
    queryFn: () => api.getAgentStatus(projectName!),
    enabled: !!projectName,
    refetchInterval: 3000, // Poll every 3 seconds
  })
}

export function useStartAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (yoloMode: boolean = false) => api.startAgent(projectName, yoloMode),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useStopAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.stopAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function usePauseAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.pauseAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

export function useResumeAgent(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: () => api.resumeAgent(projectName),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['agent-status', projectName] })
    },
  })
}

// ============================================================================
// Setup
// ============================================================================

export function useSetupStatus() {
  return useQuery({
    queryKey: ['setup-status'],
    queryFn: api.getSetupStatus,
    staleTime: 60000, // Cache for 1 minute
  })
}

export function useHealthCheck() {
  return useQuery({
    queryKey: ['health'],
    queryFn: api.healthCheck,
    retry: false,
  })
}

// ============================================================================
// Filesystem
// ============================================================================

export function useListDirectory(path?: string) {
  return useQuery({
    queryKey: ['filesystem', 'list', path],
    queryFn: () => api.listDirectory(path),
  })
}

export function useCreateDirectory() {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (path: string) => api.createDirectory(path),
    onSuccess: (_, path) => {
      // Invalidate parent directory listing
      const parentPath = path.split('/').slice(0, -1).join('/') || undefined
      queryClient.invalidateQueries({ queryKey: ['filesystem', 'list', parentPath] })
    },
  })
}

export function useValidatePath() {
  return useMutation({
    mutationFn: (path: string) => api.validatePath(path),
  })
}

// ============================================================================
// Reference Folders
// ============================================================================

export function useReferences(projectName: string | null) {
  return useQuery({
    queryKey: ['references', projectName],
    queryFn: () => api.listReferences(projectName!),
    enabled: !!projectName,
  })
}

export function useAddReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (data: ReferenceFolderCreate) => api.addReference(projectName, data),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}

export function useRemoveReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: (referenceId: number) => api.removeReference(projectName, referenceId),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}

export function useUpdateReference(projectName: string) {
  const queryClient = useQueryClient()

  return useMutation({
    mutationFn: ({ id, data }: { id: number; data: ReferenceFolderUpdate }) =>
      api.updateReference(projectName, id, data),
    onSuccess: () => {
      queryClient.invalidateQueries({ queryKey: ['references', projectName] })
    },
  })
}


I need to add:1. API functions for reinitAgent and getFeatureStats
2. React Query hooks for those3. Update the AgentControl component to show a reinit buttonLet me start with the API functions.


     1→/**
     2→ * API Client for the Autonomous Coding UI
     3→ */
     4→
     5→import type {
     6→  ProjectSummary,
     7→  ProjectDetail,
     8→  ProjectPrompts,
     9→  FeatureListResponse,
    10→  Feature,
    11→  FeatureCreate,
    12→  AgentStatusResponse,
    13→  AgentActionResponse,
    14→  SetupStatus,
    15→  DirectoryListResponse,
    16→  PathValidationResponse,
    17→  AssistantConversation,
    18→  AssistantConversationDetail,
    19→  ReferenceFolder,
    20→  ReferenceFolderCreate,
    21→  ReferenceFolderUpdate,
    22→} from './types'
    23→
    24→const API_BASE = '/api'
    25→
    26→async function fetchJSON<T>(url: string, options?: RequestInit): Promise<T> {
    27→  const response = await fetch(`${API_BASE}${url}`, {
    28→    ...options,
    29→    headers: {
    30→      'Content-Type': 'application/json',
    31→      ...options?.headers,
    32→    },
    33→  })
    34→
    35→  if (!response.ok) {
    36→    const error = await response.json().catch(() => ({ detail: 'Unknown error' }))
    37→    throw new Error(error.detail || `HTTP ${response.status}`)
    38→  }
    39→
    40→  return response.json()
    41→}
    42→
    43→// ============================================================================
    44→// Projects API
    45→// ============================================================================
    46→
    47→export async function listProjects(): Promise<ProjectSummary[]> {
    48→  return fetchJSON('/projects')
    49→}
    50→
    51→export async function createProject(
    52→  name: string,
    53→  path: string,
    54→  specMethod: 'claude' | 'manual' = 'manual'
    55→): Promise<ProjectSummary> {
    56→  return fetchJSON('/projects', {
    57→    method: 'POST',
    58→    body: JSON.stringify({ name, path, spec_method: specMethod }),
    59→  })
    60→}
    61→
    62→export async function getProject(name: string): Promise<ProjectDetail> {
    63→  return fetchJSON(`/projects/${encodeURIComponent(name)}`)
    64→}
    65→
    66→export interface DeleteProjectResponse {
    67→  success: boolean
    68→  message: string
    69→}
    70→
    71→export async function deleteProject(
    72→  name: string,
    73→  deleteFiles: boolean = false
    74→): Promise<DeleteProjectResponse> {
    75→  return fetchJSON(`/projects/${encodeURIComponent(name)}?delete_files=${deleteFiles}`, {
    76→    method: 'DELETE',
    77→  })
    78→}
    79→
    80→// Import an existing project (analyzes codebase)
    81→export interface CodebaseAnalysis {
    82→  total_files: number
    83→  file_types: Record<string, number>
    84→  detected_stack: Record<string, string>
    85→  has_claude_md: boolean
    86→  claude_md_content: string | null
    87→  has_readme: boolean
    88→  readme_content: string | null
    89→  directories: string[]
    90→  entry_points: string[]
    91→  project_name: string | null
    92→}
    93→
    94→export interface ProjectImportResponse {
    95→  project: ProjectSummary
    96→  analysis: CodebaseAnalysis
    97→  is_import: boolean
    98→}
    99→
   100→export async function importProject(
   101→  name: string,
   102→  path: string
   103→): Promise<ProjectImportResponse> {
   104→  return fetchJSON('/projects/import', {
   105→    method: 'POST',
   106→    body: JSON.stringify({ name, path }),
   107→  })
   108→}
   109→
   110→export async function getProjectPrompts(name: string): Promise<ProjectPrompts> {
   111→  return fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`)
   112→}
   113→
   114→export async function updateProjectPrompts(
   115→  name: string,
   116→  prompts: Partial<ProjectPrompts>
   117→): Promise<void> {
   118→  await fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`, {
   119→    method: 'PUT',
   120→    body: JSON.stringify(prompts),
   121→  })
   122→}
   123→
   124→// ============================================================================
   125→// Features API
   126→// ============================================================================
   127→
   128→export async function listFeatures(projectName: string): Promise<FeatureListResponse> {
   129→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`)
   130→}
   131→
   132→export async function createFeature(projectName: string, feature: FeatureCreate): Promise<Feature> {
   133→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`, {
   134→    method: 'POST',
   135→    body: JSON.stringify(feature),
   136→  })
   137→}
   138→
   139→export async function getFeature(projectName: string, featureId: number): Promise<Feature> {
   140→  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`)
   141→}
   142→
   143→export async function deleteFeature(projectName: string, featureId: number): Promise<void> {
   144→  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`, {
   145→    method: 'DELETE',
   146→  })
   147→}
   148→
   149→export async function skipFeature(projectName: string, featureId: number): Promise<void> {
   150→  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}/skip`, {

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

/**
 * API Client for the Autonomous Coding UI
 */

import type {
  ProjectSummary,
  ProjectDetail,
  ProjectPrompts,
  FeatureListResponse,
  Feature,
  FeatureCreate,
  AgentStatusResponse,
  AgentActionResponse,
  SetupStatus,
  DirectoryListResponse,
  PathValidationResponse,
  AssistantConversation,
  AssistantConversationDetail,
  ReferenceFolder,
  ReferenceFolderCreate,
  ReferenceFolderUpdate,
} from './types'

const API_BASE = '/api'

async function fetchJSON<T>(url: string, options?: RequestInit): Promise<T> {
  const response = await fetch(`${API_BASE}${url}`, {
    ...options,
    headers: {
      'Content-Type': 'application/json',
      ...options?.headers,
    },
  })

  if (!response.ok) {
    const error = await response.json().catch(() => ({ detail: 'Unknown error' }))
    throw new Error(error.detail || `HTTP ${response.status}`)
  }

  return response.json()
}

// ============================================================================
// Projects API
// ============================================================================

export async function listProjects(): Promise<ProjectSummary[]> {
  return fetchJSON('/projects')
}

export async function createProject(
  name: string,
  path: string,
  specMethod: 'claude' | 'manual' = 'manual'
): Promise<ProjectSummary> {
  return fetchJSON('/projects', {
    method: 'POST',
    body: JSON.stringify({ name, path, spec_method: specMethod }),
  })
}

export async function getProject(name: string): Promise<ProjectDetail> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}`)
}

export interface DeleteProjectResponse {
  success: boolean
  message: string
}

export async function deleteProject(
  name: string,
  deleteFiles: boolean = false
): Promise<DeleteProjectResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}?delete_files=${deleteFiles}`, {
    method: 'DELETE',
  })
}

// Import an existing project (analyzes codebase)
export interface CodebaseAnalysis {
  total_files: number
  file_types: Record<string, number>
  detected_stack: Record<string, string>
  has_claude_md: boolean
  claude_md_content: string | null
  has_readme: boolean
  readme_content: string | null
  directories: string[]
  entry_points: string[]
  project_name: string | null
}

export interface ProjectImportResponse {
  project: ProjectSummary
  analysis: CodebaseAnalysis
  is_import: boolean
}

export async function importProject(
  name: string,
  path: string
): Promise<ProjectImportResponse> {
  return fetchJSON('/projects/import', {
    method: 'POST',
    body: JSON.stringify({ name, path }),
  })
}

export async function getProjectPrompts(name: string): Promise<ProjectPrompts> {
  return fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`)
}

export async function updateProjectPrompts(
  name: string,
  prompts: Partial<ProjectPrompts>
): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(name)}/prompts`, {
    method: 'PUT',
    body: JSON.stringify(prompts),
  })
}

// ============================================================================
// Features API
// ============================================================================

export async function listFeatures(projectName: string): Promise<FeatureListResponse> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`)
}

export async function createFeature(projectName: string, feature: FeatureCreate): Promise<Feature> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features`, {
    method: 'POST',
    body: JSON.stringify(feature),
  })
}

export async function getFeature(projectName: string, featureId: number): Promise<Feature> {
  return fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`)
}

export async function deleteFeature(projectName: string, featureId: number): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}`, {
    method: 'DELETE',
  })
}

export async function skipFeature(projectName: string, featureId: number): Promise<void> {
  await fetchJSON(`/projects/${encodeURIComponent(projectName)}/features/${featureId}/skip`, {


Let me read more of the api.ts to find where the agent functions are defined, then add the new ones.