     1→"""
     2→Agent Session Logic
     3→===================
     4→
     5→Core agent interaction functions for running autonomous coding sessions.
     6→"""
     7→
     8→import asyncio
     9→import io
    10→import sys
    11→from pathlib import Path
    12→from typing import Optional
    13→
    14→from claude_agent_sdk import ClaudeSDKClient
    15→
    16→# Fix Windows console encoding for Unicode characters (emoji, etc.)
    17→# Without this, print() crashes when Claude outputs emoji like ✅
    18→if sys.platform == "win32":
    19→    sys.stdout = io.TextIOWrapper(sys.stdout.buffer, encoding='utf-8', errors='replace')
    20→    sys.stderr = io.TextIOWrapper(sys.stderr.buffer, encoding='utf-8', errors='replace')
    21→
    22→from client import create_client
    23→from progress import has_features, print_progress_summary, print_session_header
    24→from prompts import (
    25→    copy_spec_to_project,
    26→    get_coding_prompt_with_context,
    27→    get_initializer_prompt_with_context,
    28→)
    29→
    30→# Configuration
    31→AUTO_CONTINUE_DELAY_SECONDS = 3
    32→
    33→
    34→async def run_agent_session(
    35→    client: ClaudeSDKClient,
    36→    message: str,
    37→    project_dir: Path,
    38→) -> tuple[str, str]:
    39→    """
    40→    Run a single agent session using Claude Agent SDK.
    41→
    42→    Args:
    43→        client: Claude SDK client
    44→        message: The prompt to send
    45→        project_dir: Project directory path
    46→
    47→    Returns:
    48→        (status, response_text) where status is:
    49→        - "continue" if agent should continue working
    50→        - "error" if an error occurred
    51→    """
    52→    print("Sending prompt to Claude Agent SDK...\n")
    53→
    54→    try:
    55→        # Send the query
    56→        await client.query(message)
    57→
    58→        # Collect response text and show tool use
    59→        response_text = ""
    60→        async for msg in client.receive_response():
    61→            msg_type = type(msg).__name__
    62→
    63→            # Handle AssistantMessage (text and tool use)
    64→            if msg_type == "AssistantMessage" and hasattr(msg, "content"):
    65→                for block in msg.content:
    66→                    block_type = type(block).__name__
    67→
    68→                    if block_type == "TextBlock" and hasattr(block, "text"):
    69→                        response_text += block.text
    70→                        print(block.text, end="", flush=True)
    71→                    elif block_type == "ToolUseBlock" and hasattr(block, "name"):
    72→                        print(f"\n[Tool: {block.name}]", flush=True)
    73→                        if hasattr(block, "input"):
    74→                            input_str = str(block.input)
    75→                            if len(input_str) > 200:
    76→                                print(f"   Input: {input_str[:200]}...", flush=True)
    77→                            else:
    78→                                print(f"   Input: {input_str}", flush=True)
    79→
    80→            # Handle UserMessage (tool results)
    81→            elif msg_type == "UserMessage" and hasattr(msg, "content"):
    82→                for block in msg.content:
    83→                    block_type = type(block).__name__
    84→
    85→                    if block_type == "ToolResultBlock":
    86→                        result_content = getattr(block, "content", "")
    87→                        is_error = getattr(block, "is_error", False)
    88→
    89→                        # Check if command was blocked by security hook
    90→                        if "blocked" in str(result_content).lower():
    91→                            print(f"   [BLOCKED] {result_content}", flush=True)
    92→                        elif is_error:
    93→                            # Show errors (truncated)
    94→                            error_str = str(result_content)[:500]
    95→                            print(f"   [Error] {error_str}", flush=True)
    96→                        else:
    97→                            # Tool succeeded - just show brief confirmation
    98→                            print("   [Done]", flush=True)
    99→
   100→        print("\n" + "-" * 70 + "\n")

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Agent Session Logic
===================

Core agent interaction functions for running autonomous coding sessions.
"""

import asyncio
import io
import sys
from pathlib import Path
from typing import Optional

from claude_agent_sdk import ClaudeSDKClient

# Fix Windows console encoding for Unicode characters (emoji, etc.)
# Without this, print() crashes when Claude outputs emoji like ✅
if sys.platform == "win32":
    sys.stdout = io.TextIOWrapper(sys.stdout.buffer, encoding='utf-8', errors='replace')
    sys.stderr = io.TextIOWrapper(sys.stderr.buffer, encoding='utf-8', errors='replace')

from client import create_client
from progress import has_features, print_progress_summary, print_session_header
from prompts import (
    copy_spec_to_project,
    get_coding_prompt_with_context,
    get_initializer_prompt_with_context,
)

# Configuration
AUTO_CONTINUE_DELAY_SECONDS = 3

async def run_agent_session(
    client: ClaudeSDKClient,
    message: str,
    project_dir: Path,
) -> tuple[str, str]:
    """
    Run a single agent session using Claude Agent SDK.

    Args:
        client: Claude SDK client
        message: The prompt to send
        project_dir: Project directory path

    Returns:
        (status, response_text) where status is:
        - "continue" if agent should continue working
        - "error" if an error occurred
    """
    print("Sending prompt to Claude Agent SDK...\n")

    try:
        # Send the query
        await client.query(message)

        # Collect response text and show tool use
        response_text = ""
        async for msg in client.receive_response():
            msg_type = type(msg).__name__

            # Handle AssistantMessage (text and tool use)
            if msg_type == "AssistantMessage" and hasattr(msg, "content"):
                for block in msg.content:
                    block_type = type(block).__name__

                    if block_type == "TextBlock" and hasattr(block, "text"):
                        response_text += block.text
                        print(block.text, end="", flush=True)
                    elif block_type == "ToolUseBlock" and hasattr(block, "name"):
                        print(f"\n[Tool: {block.name}]", flush=True)
                        if hasattr(block, "input"):
                            input_str = str(block.input)
                            if len(input_str) > 200:
                                print(f"   Input: {input_str[:200]}...", flush=True)
                            else:
                                print(f"   Input: {input_str}", flush=True)

            # Handle UserMessage (tool results)
            elif msg_type == "UserMessage" and hasattr(msg, "content"):
                for block in msg.content:
                    block_type = type(block).__name__

                    if block_type == "ToolResultBlock":
                        result_content = getattr(block, "content", "")
                        is_error = getattr(block, "is_error", False)

                        # Check if command was blocked by security hook
                        if "blocked" in str(result_content).lower():
                            print(f"   [BLOCKED] {result_content}", flush=True)
                        elif is_error:
                            # Show errors (truncated)
                            error_str = str(result_content)[:500]
                            print(f"   [Error] {error_str}", flush=True)
                        else:
                            # Tool succeeded - just show brief confirmation
                            print("   [Done]", flush=True)

        print("\n" + "-" * 70 + "\n")


Now let me explore the server routers and UI components:


Bash

ls -la "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/server/routers/" 2>/dev/null | grep -E "\.py$"


-rw-r--r-- 1 AzureAD+MikeSwanson 4096   751 Jan 10 12:53 __init__.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  3608 Jan  8 08:02 agent.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 11974 Jan  8 08:02 assistant_chat.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  9684 Jan  8 08:02 features.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14883 Jan  8 08:02 filesystem.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 15134 Jan 10 12:24 git.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 21495 Jan 10 15:19 projects.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  5911 Jan 10 12:53 scheduler.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14694 Jan  9 10:29 spec_creation.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 13581 Jan 10 12:17 terminal.py


Let me read the key server routers:


     1→"""
     2→Agent Router
     3→============
     4→
     5→API endpoints for agent control (start/stop/pause/resume).
     6→Uses project registry for path lookups.
     7→"""
     8→
     9→import re
    10→from pathlib import Path
    11→
    12→from fastapi import APIRouter, HTTPException
    13→
    14→from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
    15→from ..services.process_manager import get_manager
    16→
    17→
    18→def _get_project_path(project_name: str) -> Path:
    19→    """Get project path from registry."""
    20→    import sys
    21→    root = Path(__file__).parent.parent.parent
    22→    if str(root) not in sys.path:
    23→        sys.path.insert(0, str(root))
    24→
    25→    from registry import get_project_path
    26→    return get_project_path(project_name)
    27→
    28→
    29→router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])
    30→
    31→# Root directory for process manager
    32→ROOT_DIR = Path(__file__).parent.parent.parent
    33→
    34→
    35→def validate_project_name(name: str) -> str:
    36→    """Validate and sanitize project name to prevent path traversal."""
    37→    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
    38→        raise HTTPException(
    39→            status_code=400,
    40→            detail="Invalid project name"
    41→        )
    42→    return name
    43→
    44→
    45→def get_project_manager(project_name: str):
    46→    """Get the process manager for a project."""
    47→    project_name = validate_project_name(project_name)
    48→    project_dir = _get_project_path(project_name)
    49→
    50→    if not project_dir:
    51→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
    52→
    53→    if not project_dir.exists():
    54→        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")
    55→
    56→    return get_manager(project_name, project_dir, ROOT_DIR)
    57→
    58→
    59→@router.get("/status", response_model=AgentStatus)
    60→async def get_agent_status(project_name: str):
    61→    """Get the current status of the agent for a project."""
    62→    manager = get_project_manager(project_name)
    63→
    64→    # Run healthcheck to detect crashed processes
    65→    await manager.healthcheck()
    66→
    67→    return AgentStatus(
    68→        status=manager.status,
    69→        pid=manager.pid,
    70→        started_at=manager.started_at,
    71→        yolo_mode=manager.yolo_mode,
    72→    )
    73→
    74→
    75→@router.post("/start", response_model=AgentActionResponse)
    76→async def start_agent(
    77→    project_name: str,
    78→    request: AgentStartRequest = AgentStartRequest(),
    79→):
    80→    """Start the agent for a project."""
    81→    manager = get_project_manager(project_name)
    82→
    83→    success, message = await manager.start(yolo_mode=request.yolo_mode)
    84→
    85→    return AgentActionResponse(
    86→        success=success,
    87→        status=manager.status,
    88→        message=message,
    89→    )
    90→
    91→
    92→@router.post("/stop", response_model=AgentActionResponse)
    93→async def stop_agent(project_name: str):
    94→    """Stop the agent for a project."""
    95→    manager = get_project_manager(project_name)
    96→
    97→    success, message = await manager.stop()
    98→
    99→    return AgentActionResponse(
   100→        success=success,
   101→        status=manager.status,
   102→        message=message,
   103→    )
   104→
   105→
   106→@router.post("/pause", response_model=AgentActionResponse)
   107→async def pause_agent(project_name: str):
   108→    """Pause the agent for a project."""
   109→    manager = get_project_manager(project_name)
   110→
   111→    success, message = await manager.pause()
   112→
   113→    return AgentActionResponse(
   114→        success=success,
   115→        status=manager.status,
   116→        message=message,
   117→    )
   118→
   119→
   120→@router.post("/resume", response_model=AgentActionResponse)
   121→async def resume_agent(project_name: str):
   122→    """Resume a paused agent."""
   123→    manager = get_project_manager(project_name)
   124→
   125→    success, message = await manager.resume()
   126→
   127→    return AgentActionResponse(
   128→        success=success,
   129→        status=manager.status,
   130→        message=message,
   131→    )
   132→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Agent Router
============

API endpoints for agent control (start/stop/pause/resume).
Uses project registry for path lookups.
"""

import re
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import AgentActionResponse, AgentStartRequest, AgentStatus
from ..services.process_manager import get_manager

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

router = APIRouter(prefix="/api/projects/{project_name}/agent", tags=["agent"])

# Root directory for process manager
ROOT_DIR = Path(__file__).parent.parent.parent

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

def get_project_manager(project_name: str):
    """Get the process manager for a project."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail=f"Project directory not found: {project_dir}")

    return get_manager(project_name, project_dir, ROOT_DIR)

@router.get("/status", response_model=AgentStatus)
async def get_agent_status(project_name: str):
    """Get the current status of the agent for a project."""
    manager = get_project_manager(project_name)

    # Run healthcheck to detect crashed processes
    await manager.healthcheck()

    return AgentStatus(
        status=manager.status,
        pid=manager.pid,
        started_at=manager.started_at,
        yolo_mode=manager.yolo_mode,
    )

@router.post("/start", response_model=AgentActionResponse)
async def start_agent(
    project_name: str,
    request: AgentStartRequest = AgentStartRequest(),
):
    """Start the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.start(yolo_mode=request.yolo_mode)

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/stop", response_model=AgentActionResponse)
async def stop_agent(project_name: str):
    """Stop the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.stop()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/pause", response_model=AgentActionResponse)
async def pause_agent(project_name: str):
    """Pause the agent for a project."""
    manager = get_project_manager(project_name)

    success, message = await manager.pause()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )

@router.post("/resume", response_model=AgentActionResponse)
async def resume_agent(project_name: str):
    """Resume a paused agent."""
    manager = get_project_manager(project_name)

    success, message = await manager.resume()

    return AgentActionResponse(
        success=success,
        status=manager.status,
        message=message,
    )


     1→"""
     2→Features Router
     3→===============
     4→
     5→API endpoints for feature/test case management.
     6→"""
     7→
     8→import logging
     9→import re
    10→from contextlib import contextmanager
    11→from pathlib import Path
    12→
    13→from fastapi import APIRouter, HTTPException
    14→
    15→from ..schemas import (
    16→    FeatureCreate,
    17→    FeatureListResponse,
    18→    FeatureResponse,
    19→)
    20→
    21→# Lazy imports to avoid circular dependencies
    22→_create_database = None
    23→_Feature = None
    24→
    25→logger = logging.getLogger(__name__)
    26→
    27→
    28→def _get_project_path(project_name: str) -> Path:
    29→    """Get project path from registry."""
    30→    import sys
    31→    root = Path(__file__).parent.parent.parent
    32→    if str(root) not in sys.path:
    33→        sys.path.insert(0, str(root))
    34→
    35→    from registry import get_project_path
    36→    return get_project_path(project_name)
    37→
    38→
    39→def _get_db_classes():
    40→    """Lazy import of database classes."""
    41→    global _create_database, _Feature
    42→    if _create_database is None:
    43→        import sys
    44→        from pathlib import Path
    45→        root = Path(__file__).parent.parent.parent
    46→        if str(root) not in sys.path:
    47→            sys.path.insert(0, str(root))
    48→        from api.database import Feature, create_database
    49→        _create_database = create_database
    50→        _Feature = Feature
    51→    return _create_database, _Feature
    52→
    53→
    54→router = APIRouter(prefix="/api/projects/{project_name}/features", tags=["features"])
    55→
    56→
    57→def validate_project_name(name: str) -> str:
    58→    """Validate and sanitize project name to prevent path traversal."""
    59→    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
    60→        raise HTTPException(
    61→            status_code=400,
    62→            detail="Invalid project name"
    63→        )
    64→    return name
    65→
    66→
    67→@contextmanager
    68→def get_db_session(project_dir: Path):
    69→    """
    70→    Context manager for database sessions.
    71→    Ensures session is always closed, even on exceptions.
    72→    """
    73→    create_database, _ = _get_db_classes()
    74→    _, SessionLocal = create_database(project_dir)
    75→    session = SessionLocal()
    76→    try:
    77→        yield session
    78→    finally:
    79→        session.close()
    80→
    81→
    82→def feature_to_response(f) -> FeatureResponse:
    83→    """Convert a Feature model to a FeatureResponse."""
    84→    return FeatureResponse(
    85→        id=f.id,
    86→        priority=f.priority,
    87→        category=f.category,
    88→        name=f.name,
    89→        description=f.description,
    90→        steps=f.steps if isinstance(f.steps, list) else [],
    91→        passes=f.passes,
    92→        in_progress=f.in_progress,
    93→    )
    94→
    95→
    96→@router.get("", response_model=FeatureListResponse)
    97→async def list_features(project_name: str):
    98→    """
    99→    List all features for a project organized by status.
   100→
   101→    Returns features in three lists:
   102→    - pending: passes=False, not currently being worked on
   103→    - in_progress: features currently being worked on (tracked via agent output)
   104→    - done: passes=True
   105→    """
   106→    project_name = validate_project_name(project_name)
   107→    project_dir = _get_project_path(project_name)
   108→
   109→    if not project_dir:
   110→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   111→
   112→    if not project_dir.exists():
   113→        raise HTTPException(status_code=404, detail="Project directory not found")
   114→
   115→    db_file = project_dir / "features.db"
   116→    if not db_file.exists():
   117→        return FeatureListResponse(pending=[], in_progress=[], done=[])
   118→
   119→    _, Feature = _get_db_classes()
   120→
   121→    try:
   122→        with get_db_session(project_dir) as session:
   123→            all_features = session.query(Feature).order_by(Feature.priority).all()
   124→
   125→            pending = []
   126→            in_progress = []
   127→            done = []
   128→
   129→            for f in all_features:
   130→                feature_response = feature_to_response(f)
   131→                if f.passes:
   132→                    done.append(feature_response)
   133→                elif f.in_progress:
   134→                    in_progress.append(feature_response)
   135→                else:
   136→                    pending.append(feature_response)
   137→
   138→            return FeatureListResponse(
   139→                pending=pending,
   140→                in_progress=in_progress,
   141→                done=done,
   142→            )
   143→    except HTTPException:
   144→        raise
   145→    except Exception:
   146→        logger.exception("Database error in list_features")
   147→        raise HTTPException(status_code=500, detail="Database error occurred")
   148→
   149→
   150→@router.post("", response_model=FeatureResponse)
   151→async def create_feature(project_name: str, feature: FeatureCreate):
   152→    """Create a new feature/test case manually."""
   153→    project_name = validate_project_name(project_name)
   154→    project_dir = _get_project_path(project_name)
   155→
   156→    if not project_dir:
   157→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   158→
   159→    if not project_dir.exists():
   160→        raise HTTPException(status_code=404, detail="Project directory not found")
   161→
   162→    _, Feature = _get_db_classes()
   163→
   164→    try:
   165→        with get_db_session(project_dir) as session:
   166→            # Get next priority if not specified
   167→            if feature.priority is None:
   168→                max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
   169→                priority = (max_priority.priority + 1) if max_priority else 1
   170→            else:
   171→                priority = feature.priority
   172→
   173→            # Create new feature
   174→            db_feature = Feature(
   175→                priority=priority,
   176→                category=feature.category,
   177→                name=feature.name,
   178→                description=feature.description,
   179→                steps=feature.steps,
   180→                passes=False,
   181→            )
   182→
   183→            session.add(db_feature)
   184→            session.commit()
   185→            session.refresh(db_feature)
   186→
   187→            return feature_to_response(db_feature)
   188→    except HTTPException:
   189→        raise
   190→    except Exception:
   191→        logger.exception("Failed to create feature")
   192→        raise HTTPException(status_code=500, detail="Failed to create feature")
   193→
   194→
   195→@router.get("/{feature_id}", response_model=FeatureResponse)
   196→async def get_feature(project_name: str, feature_id: int):
   197→    """Get details of a specific feature."""
   198→    project_name = validate_project_name(project_name)
   199→    project_dir = _get_project_path(project_name)
   200→
   201→    if not project_dir:
   202→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   203→
   204→    if not project_dir.exists():
   205→        raise HTTPException(status_code=404, detail="Project directory not found")
   206→
   207→    db_file = project_dir / "features.db"
   208→    if not db_file.exists():
   209→        raise HTTPException(status_code=404, detail="No features database found")
   210→
   211→    _, Feature = _get_db_classes()
   212→
   213→    try:
   214→        with get_db_session(project_dir) as session:
   215→            feature = session.query(Feature).filter(Feature.id == feature_id).first()
   216→
   217→            if not feature:
   218→                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")
   219→
   220→            return feature_to_response(feature)
   221→    except HTTPException:
   222→        raise
   223→    except Exception:
   224→        logger.exception("Database error in get_feature")
   225→        raise HTTPException(status_code=500, detail="Database error occurred")
   226→
   227→
   228→@router.delete("/{feature_id}")
   229→async def delete_feature(project_name: str, feature_id: int):
   230→    """Delete a feature."""
   231→    project_name = validate_project_name(project_name)
   232→    project_dir = _get_project_path(project_name)
   233→
   234→    if not project_dir:
   235→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   236→
   237→    if not project_dir.exists():
   238→        raise HTTPException(status_code=404, detail="Project directory not found")
   239→
   240→    _, Feature = _get_db_classes()
   241→
   242→    try:
   243→        with get_db_session(project_dir) as session:
   244→            feature = session.query(Feature).filter(Feature.id == feature_id).first()
   245→
   246→            if not feature:
   247→                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")
   248→
   249→            session.delete(feature)
   250→            session.commit()
   251→
   252→            return {"success": True, "message": f"Feature {feature_id} deleted"}
   253→    except HTTPException:
   254→        raise
   255→    except Exception:
   256→        logger.exception("Failed to delete feature")
   257→        raise HTTPException(status_code=500, detail="Failed to delete feature")
   258→
   259→
   260→@router.patch("/{feature_id}/skip")
   261→async def skip_feature(project_name: str, feature_id: int):
   262→    """
   263→    Mark a feature as skipped by moving it to the end of the priority queue.
   264→
   265→    This doesn't delete the feature but gives it a very high priority number
   266→    so it will be processed last.
   267→    """
   268→    project_name = validate_project_name(project_name)
   269→    project_dir = _get_project_path(project_name)
   270→
   271→    if not project_dir:
   272→        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")
   273→
   274→    if not project_dir.exists():
   275→        raise HTTPException(status_code=404, detail="Project directory not found")
   276→
   277→    _, Feature = _get_db_classes()
   278→
   279→    try:
   280→        with get_db_session(project_dir) as session:
   281→            feature = session.query(Feature).filter(Feature.id == feature_id).first()
   282→
   283→            if not feature:
   284→                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")
   285→
   286→            # Set priority to max + 1000 to push to end
   287→            max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
   288→            feature.priority = (max_priority.priority if max_priority else 0) + 1000
   289→
   290→            session.commit()
   291→
   292→            return {"success": True, "message": f"Feature {feature_id} moved to end of queue"}
   293→    except HTTPException:
   294→        raise
   295→    except Exception:
   296→        logger.exception("Failed to skip feature")
   297→        raise HTTPException(status_code=500, detail="Failed to skip feature")
   298→

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Features Router
===============

API endpoints for feature/test case management.
"""

import logging
import re
from contextlib import contextmanager
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import (
    FeatureCreate,
    FeatureListResponse,
    FeatureResponse,
)

# Lazy imports to avoid circular dependencies
_create_database = None
_Feature = None

logger = logging.getLogger(__name__)

def _get_project_path(project_name: str) -> Path:
    """Get project path from registry."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import get_project_path
    return get_project_path(project_name)

def _get_db_classes():
    """Lazy import of database classes."""
    global _create_database, _Feature
    if _create_database is None:
        import sys
        from pathlib import Path
        root = Path(__file__).parent.parent.parent
        if str(root) not in sys.path:
            sys.path.insert(0, str(root))
        from api.database import Feature, create_database
        _create_database = create_database
        _Feature = Feature
    return _create_database, _Feature

router = APIRouter(prefix="/api/projects/{project_name}/features", tags=["features"])

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(
            status_code=400,
            detail="Invalid project name"
        )
    return name

@contextmanager
def get_db_session(project_dir: Path):
    """
    Context manager for database sessions.
    Ensures session is always closed, even on exceptions.
    """
    create_database, _ = _get_db_classes()
    _, SessionLocal = create_database(project_dir)
    session = SessionLocal()
    try:
        yield session
    finally:
        session.close()

def feature_to_response(f) -> FeatureResponse:
    """Convert a Feature model to a FeatureResponse."""
    return FeatureResponse(
        id=f.id,
        priority=f.priority,
        category=f.category,
        name=f.name,
        description=f.description,
        steps=f.steps if isinstance(f.steps, list) else [],
        passes=f.passes,
        in_progress=f.in_progress,
    )

@router.get("", response_model=FeatureListResponse)
async def list_features(project_name: str):
    """
    List all features for a project organized by status.

    Returns features in three lists:
    - pending: passes=False, not currently being worked on
    - in_progress: features currently being worked on (tracked via agent output)
    - done: passes=True
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    if not db_file.exists():
        return FeatureListResponse(pending=[], in_progress=[], done=[])

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            all_features = session.query(Feature).order_by(Feature.priority).all()

            pending = []
            in_progress = []
            done = []

            for f in all_features:
                feature_response = feature_to_response(f)
                if f.passes:
                    done.append(feature_response)
                elif f.in_progress:
                    in_progress.append(feature_response)
                else:
                    pending.append(feature_response)

            return FeatureListResponse(
                pending=pending,
                in_progress=in_progress,
                done=done,
            )
    except HTTPException:
        raise
    except Exception:
        logger.exception("Database error in list_features")
        raise HTTPException(status_code=500, detail="Database error occurred")

@router.post("", response_model=FeatureResponse)
async def create_feature(project_name: str, feature: FeatureCreate):
    """Create a new feature/test case manually."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            # Get next priority if not specified
            if feature.priority is None:
                max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
                priority = (max_priority.priority + 1) if max_priority else 1
            else:
                priority = feature.priority

            # Create new feature
            db_feature = Feature(
                priority=priority,
                category=feature.category,
                name=feature.name,
                description=feature.description,
                steps=feature.steps,
                passes=False,
            )

            session.add(db_feature)
            session.commit()
            session.refresh(db_feature)

            return feature_to_response(db_feature)
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to create feature")
        raise HTTPException(status_code=500, detail="Failed to create feature")

@router.get("/{feature_id}", response_model=FeatureResponse)
async def get_feature(project_name: str, feature_id: int):
    """Get details of a specific feature."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    db_file = project_dir / "features.db"
    if not db_file.exists():
        raise HTTPException(status_code=404, detail="No features database found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            return feature_to_response(feature)
    except HTTPException:
        raise
    except Exception:
        logger.exception("Database error in get_feature")
        raise HTTPException(status_code=500, detail="Database error occurred")

@router.delete("/{feature_id}")
async def delete_feature(project_name: str, feature_id: int):
    """Delete a feature."""
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            session.delete(feature)
            session.commit()

            return {"success": True, "message": f"Feature {feature_id} deleted"}
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to delete feature")
        raise HTTPException(status_code=500, detail="Failed to delete feature")

@router.patch("/{feature_id}/skip")
async def skip_feature(project_name: str, feature_id: int):
    """
    Mark a feature as skipped by moving it to the end of the priority queue.

    This doesn't delete the feature but gives it a very high priority number
    so it will be processed last.
    """
    project_name = validate_project_name(project_name)
    project_dir = _get_project_path(project_name)

    if not project_dir:
        raise HTTPException(status_code=404, detail=f"Project '{project_name}' not found in registry")

    if not project_dir.exists():
        raise HTTPException(status_code=404, detail="Project directory not found")

    _, Feature = _get_db_classes()

    try:
        with get_db_session(project_dir) as session:
            feature = session.query(Feature).filter(Feature.id == feature_id).first()

            if not feature:
                raise HTTPException(status_code=404, detail=f"Feature {feature_id} not found")

            # Set priority to max + 1000 to push to end
            max_priority = session.query(Feature).order_by(Feature.priority.desc()).first()
            feature.priority = (max_priority.priority if max_priority else 0) + 1000

            session.commit()

            return {"success": True, "message": f"Feature {feature_id} moved to end of queue"}
    except HTTPException:
        raise
    except Exception:
        logger.exception("Failed to skip feature")
        raise HTTPException(status_code=500, detail="Failed to skip feature")


     1→"""
     2→Projects Router
     3→===============
     4→
     5→API endpoints for project management.
     6→Uses project registry for path lookups instead of fixed generations/ directory.
     7→"""
     8→
     9→import re
    10→import shutil
    11→from pathlib import Path
    12→
    13→from fastapi import APIRouter, HTTPException
    14→
    15→from ..schemas import (
    16→    ProjectCreate,
    17→    ProjectDetail,
    18→    ProjectPrompts,
    19→    ProjectPromptsUpdate,
    20→    ProjectStats,
    21→    ProjectSummary,
    22→    ProjectImport,
    23→    ProjectImportResponse,
    24→    CodebaseAnalysis,
    25→)
    26→
    27→# Lazy imports to avoid circular dependencies
    28→_imports_initialized = False
    29→_check_spec_exists = None
    30→_scaffold_project_prompts = None
    31→_get_project_prompts_dir = None
    32→_count_passing_tests = None
    33→
    34→
    35→def _init_imports():
    36→    """Lazy import of project-level modules."""
    37→    global _imports_initialized, _check_spec_exists
    38→    global _scaffold_project_prompts, _get_project_prompts_dir
    39→    global _count_passing_tests
    40→
    41→    if _imports_initialized:
    42→        return
    43→
    44→    import sys
    45→    root = Path(__file__).parent.parent.parent
    46→    if str(root) not in sys.path:
    47→        sys.path.insert(0, str(root))
    48→
    49→    from progress import count_passing_tests
    50→    from prompts import get_project_prompts_dir, scaffold_project_prompts
    51→    from start import check_spec_exists
    52→
    53→    _check_spec_exists = check_spec_exists
    54→    _scaffold_project_prompts = scaffold_project_prompts
    55→    _get_project_prompts_dir = get_project_prompts_dir
    56→    _count_passing_tests = count_passing_tests
    57→    _imports_initialized = True
    58→
    59→
    60→def _get_registry_functions():
    61→    """Get registry functions with lazy import."""
    62→    import sys
    63→    root = Path(__file__).parent.parent.parent
    64→    if str(root) not in sys.path:
    65→        sys.path.insert(0, str(root))
    66→
    67→    from registry import (
    68→        get_project_path,
    69→        list_registered_projects,
    70→        register_project,
    71→        unregister_project,
    72→        validate_project_path,
    73→    )
    74→    return register_project, unregister_project, get_project_path, list_registered_projects, validate_project_path
    75→
    76→
    77→def _get_reference_functions():
    78→    """Get reference folder functions with lazy import."""
    79→    import sys
    80→    root = Path(__file__).parent.parent.parent
    81→    if str(root) not in sys.path:
    82→        sys.path.insert(0, str(root))
    83→
    84→    from registry import (
    85→        add_reference_folder,
    86→        remove_reference_folder,
    87→        list_reference_folders,
    88→        get_reference_folder,
    89→        update_reference_folder,
    90→    )
    91→    return add_reference_folder, remove_reference_folder, list_reference_folders, get_reference_folder, update_reference_folder
    92→
    93→
    94→router = APIRouter(prefix="/api/projects", tags=["projects"])
    95→
    96→
    97→def validate_project_name(name: str) -> str:
    98→    """Validate and sanitize project name to prevent path traversal."""
    99→    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
   100→        raise HTTPException(

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Projects Router
===============

API endpoints for project management.
Uses project registry for path lookups instead of fixed generations/ directory.
"""

import re
import shutil
from pathlib import Path

from fastapi import APIRouter, HTTPException

from ..schemas import (
    ProjectCreate,
    ProjectDetail,
    ProjectPrompts,
    ProjectPromptsUpdate,
    ProjectStats,
    ProjectSummary,
    ProjectImport,
    ProjectImportResponse,
    CodebaseAnalysis,
)

# Lazy imports to avoid circular dependencies
_imports_initialized = False
_check_spec_exists = None
_scaffold_project_prompts = None
_get_project_prompts_dir = None
_count_passing_tests = None

def _init_imports():
    """Lazy import of project-level modules."""
    global _imports_initialized, _check_spec_exists
    global _scaffold_project_prompts, _get_project_prompts_dir
    global _count_passing_tests

    if _imports_initialized:
        return

    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from progress import count_passing_tests
    from prompts import get_project_prompts_dir, scaffold_project_prompts
    from start import check_spec_exists

    _check_spec_exists = check_spec_exists
    _scaffold_project_prompts = scaffold_project_prompts
    _get_project_prompts_dir = get_project_prompts_dir
    _count_passing_tests = count_passing_tests
    _imports_initialized = True

def _get_registry_functions():
    """Get registry functions with lazy import."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import (
        get_project_path,
        list_registered_projects,
        register_project,
        unregister_project,
        validate_project_path,
    )
    return register_project, unregister_project, get_project_path, list_registered_projects, validate_project_path

def _get_reference_functions():
    """Get reference folder functions with lazy import."""
    import sys
    root = Path(__file__).parent.parent.parent
    if str(root) not in sys.path:
        sys.path.insert(0, str(root))

    from registry import (
        add_reference_folder,
        remove_reference_folder,
        list_reference_folders,
        get_reference_folder,
        update_reference_folder,
    )
    return add_reference_folder, remove_reference_folder, list_reference_folders, get_reference_folder, update_reference_folder

router = APIRouter(prefix="/api/projects", tags=["projects"])

def validate_project_name(name: str) -> str:
    """Validate and sanitize project name to prevent path traversal."""
    if not re.match(r'^[a-zA-Z0-9_-]{1,50}$', name):
        raise HTTPException(


Let me get the UI components:


ls -la "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/ui/src/components/" 2>/dev/null | grep -E "\.(tsx|ts)$"


-rw-r--r-- 1 AzureAD+MikeSwanson 4096  7316 Jan  8 08:02 AddFeatureForm.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  5241 Jan  8 08:02 AgentControl.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  4955 Jan  8 08:02 AgentThought.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  5827 Jan  8 08:02 AssistantChat.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096   983 Jan  8 08:02 AssistantFAB.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  2374 Jan  8 08:02 AssistantPanel.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  6119 Jan  8 08:02 ChatMessage.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  8011 Jan  8 08:02 DebugLogViewer.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  6455 Jan 10 14:09 DeleteProjectModal.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  2530 Jan  8 08:02 FeatureCard.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  6395 Jan  8 08:02 FeatureModal.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 12063 Jan  9 10:32 FolderBrowser.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 18711 Jan 10 13:58 GitPanel.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  1519 Jan  8 08:02 KanbanBoard.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  1814 Jan  8 08:02 KanbanColumn.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 21230 Jan 11 07:53 NewProjectModal.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  2247 Jan  8 08:02 ProgressDashboard.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  5569 Jan 10 14:46 ProjectSelector.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  8276 Jan  8 08:02 QuestionOptions.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 11387 Jan 10 14:34 ReferenceFoldersPanel.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  5712 Jan  8 08:02 SetupWizard.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 17959 Jan  9 10:39 SpecCreationChat.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14815 Jan 10 12:20 TerminalChat.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096   897 Jan  8 08:02 TypingIndicator.tsx


Now let me check the prompt templates and explore more server services:


ls -la "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/.claude/templates/" 2>/dev/null


total 64
drwxr-xr-x 1 AzureAD+MikeSwanson 4096     0 Jan 10 13:25 ./
drwxr-xr-x 1 AzureAD+MikeSwanson 4096     0 Jan 10 13:25 ../
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  9035 Jan  8 08:02 app_spec.template.txt
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14174 Jan  8 08:02 coding_prompt.template.md
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  7910 Jan  8 08:02 coding_prompt_yolo.template.md
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 19456 Jan  8 08:02 initializer_prompt.template.md


Let me read the prompt templates and explore more files:


ls -la "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/server/services/" 2>/dev/null | grep -E "\.py$"


     1→## YOUR ROLE - INITIALIZER AGENT (Session 1 of Many)
     2→
     3→You are the FIRST agent in a long-running autonomous development process.
     4→Your job is to set up the foundation for all future coding agents.
     5→
     6→### FIRST: Read the Project Specification
     7→
     8→Start by reading `app_spec.txt` in your working directory. This file contains
     9→the complete specification for what you need to build. Read it carefully
    10→before proceeding.
    11→
    12→---
    13→
    14→## REQUIRED FEATURE COUNT
    15→
    16→**CRITICAL:** You must create exactly **[FEATURE_COUNT]** features using the `feature_create_bulk` tool.
    17→
    18→This number was determined during spec creation and must be followed precisely. Do not create more or fewer features than specified.
    19→
    20→---
    21→
    22→### CRITICAL FIRST TASK: Create Features
    23→
    24→Based on `app_spec.txt`, create features using the feature_create_bulk tool. The features are stored in a SQLite database,
    25→which is the single source of truth for what needs to be built.
    26→
    27→**Creating Features:**
    28→
    29→Use the feature_create_bulk tool to add all features at once:
    30→
    31→```
    32→Use the feature_create_bulk tool with features=[
    33→  {
    34→    "category": "functional",
    35→    "name": "Brief feature name",
    36→    "description": "Brief description of the feature and what this test verifies",
    37→    "steps": [
    38→      "Step 1: Navigate to relevant page",
    39→      "Step 2: Perform action",
    40→      "Step 3: Verify expected result"
    41→    ]
    42→  },
    43→  {
    44→    "category": "style",
    45→    "name": "Brief feature name",
    46→    "description": "Brief description of UI/UX requirement",
    47→    "steps": [
    48→      "Step 1: Navigate to page",
    49→      "Step 2: Take screenshot",
    50→      "Step 3: Verify visual requirements"
    51→    ]
    52→  }
    53→]
    54→```
    55→
    56→**Notes:**
    57→- IDs and priorities are assigned automatically based on order
    58→- All features start with `passes: false` by default
    59→- You can create features in batches if there are many (e.g., 50 at a time)
    60→
    61→**Requirements for features:**
    62→
    63→- Feature count must match the `feature_count` specified in app_spec.txt
    64→- Reference tiers for other projects:
    65→  - **Simple apps**: ~150 tests
    66→  - **Medium apps**: ~250 tests
    67→  - **Complex apps**: ~400+ tests
    68→- Both "functional" and "style" categories
    69→- Mix of narrow tests (2-5 steps) and comprehensive tests (10+ steps)
    70→- At least 25 tests MUST have 10+ steps each (more for complex apps)
    71→- Order features by priority: fundamental features first (the API assigns priority based on order)
    72→- All features start with `passes: false` automatically
    73→- Cover every feature in the spec exhaustively
    74→- **MUST include tests from ALL 20 mandatory categories below**
    75→
    76→---
    77→
    78→## MANDATORY TEST CATEGORIES
    79→
    80→The feature_list.json **MUST** include tests from ALL of these categories. The minimum counts scale by complexity tier.

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

## YOUR ROLE - INITIALIZER AGENT (Session 1 of Many)

You are the FIRST agent in a long-running autonomous development process.
Your job is to set up the foundation for all future coding agents.

### FIRST: Read the Project Specification

Start by reading `app_spec.txt` in your working directory. This file contains
the complete specification for what you need to build. Read it carefully
before proceeding.

---

## REQUIRED FEATURE COUNT

**CRITICAL:** You must create exactly **[FEATURE_COUNT]** features using the `feature_create_bulk` tool.

This number was determined during spec creation and must be followed precisely. Do not create more or fewer features than specified.

---

### CRITICAL FIRST TASK: Create Features

Based on `app_spec.txt`, create features using the feature_create_bulk tool. The features are stored in a SQLite database,
which is the single source of truth for what needs to be built.

**Creating Features:**

Use the feature_create_bulk tool to add all features at once:

```
Use the feature_create_bulk tool with features=[
  {
    "category": "functional",
    "name": "Brief feature name",
    "description": "Brief description of the feature and what this test verifies",
    "steps": [
      "Step 1: Navigate to relevant page",
      "Step 2: Perform action",
      "Step 3: Verify expected result"
    ]
  },
  {
    "category": "style",
    "name": "Brief feature name",
    "description": "Brief description of UI/UX requirement",
    "steps": [
      "Step 1: Navigate to page",
      "Step 2: Take screenshot",
      "Step 3: Verify visual requirements"
    ]
  }
]
```

**Notes:**
- IDs and priorities are assigned automatically based on order
- All features start with `passes: false` by default
- You can create features in batches if there are many (e.g., 50 at a time)

**Requirements for features:**

- Feature count must match the `feature_count` specified in app_spec.txt
- Reference tiers for other projects:
  - **Simple apps**: ~150 tests
  - **Medium apps**: ~250 tests
  - **Complex apps**: ~400+ tests
- Both "functional" and "style" categories
- Mix of narrow tests (2-5 steps) and comprehensive tests (10+ steps)
- At least 25 tests MUST have 10+ steps each (more for complex apps)
- Order features by priority: fundamental features first (the API assigns priority based on order)
- All features start with `passes: false` automatically
- Cover every feature in the spec exhaustively
- **MUST include tests from ALL 20 mandatory categories below**

---

## MANDATORY TEST CATEGORIES

The feature_list.json **MUST** include tests from ALL of these categories. The minimum counts scale by complexity tier.


     1→## YOUR ROLE - CODING AGENT
     2→
     3→You are continuing work on a long-running autonomous development task.
     4→This is a FRESH context window - you have no memory of previous sessions.
     5→
     6→### STEP 1: GET YOUR BEARINGS (MANDATORY)
     7→
     8→Start by orienting yourself:
     9→
    10→```bash
    11→# 1. See your working directory
    12→pwd
    13→
    14→# 2. List files to understand project structure
    15→ls -la
    16→
    17→# 3. Read the project specification to understand what you're building
    18→cat app_spec.txt
    19→
    20→# 4. Read progress notes from previous sessions
    21→cat claude-progress.txt
    22→
    23→# 5. Check recent git history
    24→git log --oneline -20
    25→```
    26→
    27→Then use MCP tools to check feature status:
    28→
    29→```
    30→# 6. Get progress statistics (passing/total counts)
    31→Use the feature_get_stats tool
    32→
    33→# 7. Get the next feature to work on
    34→Use the feature_get_next tool
    35→```
    36→
    37→Understanding the `app_spec.txt` is critical - it contains the full requirements
    38→for the application you're building.
    39→
    40→### STEP 2: START SERVERS (IF NOT RUNNING)
    41→
    42→If `init.sh` exists, run it:
    43→
    44→```bash
    45→chmod +x init.sh
    46→./init.sh
    47→```
    48→
    49→Otherwise, start servers manually and document the process.
    50→
    51→### STEP 3: VERIFICATION TEST (CRITICAL!)
    52→
    53→**MANDATORY BEFORE NEW WORK:**
    54→
    55→The previous session may have introduced bugs. Before implementing anything
    56→new, you MUST run verification tests.
    57→
    58→Run 1-2 of the features marked as passing that are most core to the app's functionality to verify they still work.
    59→
    60→To get passing features for regression testing:
    61→
    62→```
    63→Use the feature_get_for_regression tool (returns up to 3 random passing features)
    64→```
    65→
    66→For example, if this were a chat app, you should perform a test that logs into the app, sends a message, and gets a response.
    67→
    68→**If you find ANY issues (functional or visual):**
    69→
    70→- Mark that feature as "passes": false immediately
    71→- Add issues to a list
    72→- Fix all issues BEFORE moving to new features
    73→- This includes UI bugs like:
    74→  - White-on-white text or poor contrast
    75→  - Random characters displayed
    76→  - Incorrect timestamps
    77→  - Layout issues or overflow
    78→  - Buttons too close together
    79→  - Missing hover states
    80→  - Console errors

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

## YOUR ROLE - CODING AGENT

You are continuing work on a long-running autonomous development task.
This is a FRESH context window - you have no memory of previous sessions.

### STEP 1: GET YOUR BEARINGS (MANDATORY)

Start by orienting yourself:

```bash
# 1. See your working directory
pwd

# 2. List files to understand project structure
ls -la

# 3. Read the project specification to understand what you're building
cat app_spec.txt

# 4. Read progress notes from previous sessions
cat claude-progress.txt

# 5. Check recent git history
git log --oneline -20
```

Then use MCP tools to check feature status:

```
# 6. Get progress statistics (passing/total counts)
Use the feature_get_stats tool

# 7. Get the next feature to work on
Use the feature_get_next tool
```

Understanding the `app_spec.txt` is critical - it contains the full requirements
for the application you're building.

### STEP 2: START SERVERS (IF NOT RUNNING)

If `init.sh` exists, run it:

```bash
chmod +x init.sh
./init.sh
```

Otherwise, start servers manually and document the process.

### STEP 3: VERIFICATION TEST (CRITICAL!)

**MANDATORY BEFORE NEW WORK:**

The previous session may have introduced bugs. Before implementing anything
new, you MUST run verification tests.

Run 1-2 of the features marked as passing that are most core to the app's functionality to verify they still work.

To get passing features for regression testing:

```
Use the feature_get_for_regression tool (returns up to 3 random passing features)
```

For example, if this were a chat app, you should perform a test that logs into the app, sends a message, and gets a response.

**If you find ANY issues (functional or visual):**

- Mark that feature as "passes": false immediately
- Add issues to a list
- Fix all issues BEFORE moving to new features
- This includes UI bugs like:
  - White-on-white text or poor contrast
  - Random characters displayed
  - Incorrect timestamps
  - Layout issues or overflow
  - Buttons too close together
  - Missing hover states
  - Console errors


-rw-r--r-- 1 AzureAD+MikeSwanson 4096  1251 Jan 10 12:54 __init__.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 12981 Jan  8 08:02 assistant_chat_session.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096  7786 Jan  8 08:02 assistant_database.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 13919 Jan 10 12:12 credential_resolver.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 15240 Jan 10 12:39 feature_graph.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 15164 Jan 10 12:40 file_lock.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 15755 Jan 10 12:21 git_operations.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14512 Jan  8 08:02 process_manager.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 25577 Jan 10 12:13 resource_manager.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 17376 Jan 10 12:52 smart_scheduler.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 21077 Jan  9 10:29 spec_chat_session.py
-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14586 Jan 10 12:16 terminal_session.py


Let me read a couple of key service files and check the main entry points:


     1→"""
     2→FastAPI Main Application
     3→========================
     4→
     5→Main entry point for the Autonomous Coding UI server.
     6→Provides REST API, WebSocket, and static file serving.
     7→"""
     8→
     9→import shutil
    10→from contextlib import asynccontextmanager
    11→from pathlib import Path
    12→
    13→from fastapi import FastAPI, HTTPException, Request, WebSocket
    14→from fastapi.middleware.cors import CORSMiddleware
    15→from fastapi.responses import FileResponse
    16→from fastapi.staticfiles import StaticFiles
    17→
    18→from .routers import (
    19→    agent_router,
    20→    assistant_chat_router,
    21→    features_router,
    22→    filesystem_router,
    23→    projects_router,
    24→    spec_creation_router,
    25→    terminal_router,
    26→    git_router,
    27→    scheduler_router,
    28→)
    29→from .schemas import SetupStatus
    30→from .services.assistant_chat_session import cleanup_all_sessions as cleanup_assistant_sessions
    31→from .services.process_manager import cleanup_all_managers
    32→from .websocket import project_websocket
    33→
    34→# Paths
    35→ROOT_DIR = Path(__file__).parent.parent
    36→UI_DIST_DIR = ROOT_DIR / "ui" / "dist"
    37→
    38→
    39→@asynccontextmanager
    40→async def lifespan(app: FastAPI):
    41→    """Lifespan context manager for startup and shutdown."""
    42→    # Startup
    43→    yield
    44→    # Shutdown - cleanup all running agents and assistant sessions
    45→    await cleanup_all_managers()
    46→    await cleanup_assistant_sessions()
    47→
    48→
    49→# Create FastAPI app
    50→app = FastAPI(
    51→    title="Autonomous Coding UI",
    52→    description="Web UI for the Autonomous Coding Agent",
    53→    version="1.0.0",
    54→    lifespan=lifespan,
    55→)
    56→
    57→# CORS - allow only localhost origins for security
    58→app.add_middleware(
    59→    CORSMiddleware,
    60→    allow_origins=[
    61→        "http://localhost:5173",      # Vite dev server
    62→        "http://127.0.0.1:5173",
    63→        "http://localhost:8888",      # Production
    64→        "http://127.0.0.1:8888",
    65→    ],
    66→    allow_credentials=True,
    67→    allow_methods=["*"],
    68→    allow_headers=["*"],
    69→)
    70→
    71→
    72→# ============================================================================
    73→# Security Middleware
    74→# ============================================================================
    75→
    76→@app.middleware("http")
    77→async def require_localhost(request: Request, call_next):
    78→    """Only allow requests from localhost."""
    79→    client_host = request.client.host if request.client else None
    80→
    81→    # Allow localhost connections
    82→    if client_host not in ("127.0.0.1", "::1", "localhost", None):
    83→        raise HTTPException(status_code=403, detail="Localhost access only")
    84→
    85→    return await call_next(request)
    86→
    87→
    88→# ============================================================================
    89→# Include Routers
    90→# ============================================================================
    91→
    92→app.include_router(projects_router)
    93→app.include_router(features_router)
    94→app.include_router(agent_router)
    95→app.include_router(spec_creation_router)
    96→app.include_router(filesystem_router)
    97→app.include_router(assistant_chat_router)
    98→app.include_router(terminal_router)
    99→app.include_router(git_router)
   100→app.include_router(scheduler_router)

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
FastAPI Main Application
========================

Main entry point for the Autonomous Coding UI server.
Provides REST API, WebSocket, and static file serving.
"""

import shutil
from contextlib import asynccontextmanager
from pathlib import Path

from fastapi import FastAPI, HTTPException, Request, WebSocket
from fastapi.middleware.cors import CORSMiddleware
from fastapi.responses import FileResponse
from fastapi.staticfiles import StaticFiles

from .routers import (
    agent_router,
    assistant_chat_router,
    features_router,
    filesystem_router,
    projects_router,
    spec_creation_router,
    terminal_router,
    git_router,
    scheduler_router,
)
from .schemas import SetupStatus
from .services.assistant_chat_session import cleanup_all_sessions as cleanup_assistant_sessions
from .services.process_manager import cleanup_all_managers
from .websocket import project_websocket

# Paths
ROOT_DIR = Path(__file__).parent.parent
UI_DIST_DIR = ROOT_DIR / "ui" / "dist"

@asynccontextmanager
async def lifespan(app: FastAPI):
    """Lifespan context manager for startup and shutdown."""
    # Startup
    yield
    # Shutdown - cleanup all running agents and assistant sessions
    await cleanup_all_managers()
    await cleanup_assistant_sessions()

# Create FastAPI app
app = FastAPI(
    title="Autonomous Coding UI",
    description="Web UI for the Autonomous Coding Agent",
    version="1.0.0",
    lifespan=lifespan,
)

# CORS - allow only localhost origins for security
app.add_middleware(
    CORSMiddleware,
    allow_origins=[
        "http://localhost:5173",      # Vite dev server
        "http://127.0.0.1:5173",
        "http://localhost:8888",      # Production
        "http://127.0.0.1:8888",
    ],
    allow_credentials=True,
    allow_methods=["*"],
    allow_headers=["*"],
)

# ============================================================================
# Security Middleware
# ============================================================================

@app.middleware("http")
async def require_localhost(request: Request, call_next):
    """Only allow requests from localhost."""
    client_host = request.client.host if request.client else None

    # Allow localhost connections
    if client_host not in ("127.0.0.1", "::1", "localhost", None):
        raise HTTPException(status_code=403, detail="Localhost access only")

    return await call_next(request)

# ============================================================================
# Include Routers
# ============================================================================

app.include_router(projects_router)
app.include_router(features_router)
app.include_router(agent_router)
app.include_router(spec_creation_router)
app.include_router(filesystem_router)
app.include_router(assistant_chat_router)
app.include_router(terminal_router)
app.include_router(git_router)
app.include_router(scheduler_router)


     1→#!/usr/bin/env python3
     2→"""
     3→Autonomous Coding Agent Demo
     4→============================
     5→
     6→A minimal harness demonstrating long-running autonomous coding with Claude.
     7→This script implements the two-agent pattern (initializer + coding agent) and
     8→incorporates all the strategies from the long-running agents guide.
     9→
    10→Example Usage:
    11→    # Using absolute path directly
    12→    python autonomous_agent_demo.py --project-dir C:/Projects/my-app
    13→
    14→    # Using registered project name (looked up from registry)
    15→    python autonomous_agent_demo.py --project-dir my-app
    16→
    17→    # Limit iterations for testing
    18→    python autonomous_agent_demo.py --project-dir my-app --max-iterations 5
    19→
    20→    # YOLO mode: rapid prototyping without browser testing
    21→    python autonomous_agent_demo.py --project-dir my-app --yolo
    22→"""
    23→
    24→import argparse
    25→import asyncio
    26→from pathlib import Path
    27→
    28→from dotenv import load_dotenv
    29→
    30→# Load environment variables from .env file (if it exists)
    31→# IMPORTANT: Must be called BEFORE importing other modules that read env vars at load time
    32→load_dotenv()
    33→
    34→from agent import run_autonomous_agent
    35→from registry import get_project_path
    36→
    37→# Configuration
    38→# DEFAULT_MODEL = "claude-sonnet-4-5-20250929"
    39→DEFAULT_MODEL = "claude-opus-4-5-20251101"
    40→
    41→
    42→def parse_args() -> argparse.Namespace:
    43→    """Parse command line arguments."""
    44→    parser = argparse.ArgumentParser(
    45→        description="Autonomous Coding Agent Demo - Long-running agent harness",
    46→        formatter_class=argparse.RawDescriptionHelpFormatter,
    47→        epilog="""
    48→Examples:
    49→  # Use absolute path directly
    50→  python autonomous_agent_demo.py --project-dir C:/Projects/my-app
    51→
    52→  # Use registered project name (looked up from registry)
    53→  python autonomous_agent_demo.py --project-dir my-app
    54→
    55→  # Use a specific model
    56→  python autonomous_agent_demo.py --project-dir my-app --model claude-sonnet-4-5-20250929
    57→
    58→  # Limit iterations for testing
    59→  python autonomous_agent_demo.py --project-dir my-app --max-iterations 5
    60→
    61→  # YOLO mode: rapid prototyping without browser testing
    62→  python autonomous_agent_demo.py --project-dir my-app --yolo
    63→
    64→Authentication:
    65→  Uses Claude CLI credentials from ~/.claude/.credentials.json
    66→  Run 'claude login' to authenticate (handled by start.bat/start.sh)
    67→        """,
    68→    )
    69→
    70→    parser.add_argument(
    71→        "--project-dir",
    72→        type=str,
    73→        required=True,
    74→        help="Project directory path (absolute) or registered project name",
    75→    )
    76→
    77→    parser.add_argument(
    78→        "--max-iterations",
    79→        type=int,
    80→        default=None,

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

#!/usr/bin/env python3
"""
Autonomous Coding Agent Demo
============================

A minimal harness demonstrating long-running autonomous coding with Claude.
This script implements the two-agent pattern (initializer + coding agent) and
incorporates all the strategies from the long-running agents guide.

Example Usage:
    # Using absolute path directly
    python autonomous_agent_demo.py --project-dir C:/Projects/my-app

    # Using registered project name (looked up from registry)
    python autonomous_agent_demo.py --project-dir my-app

    # Limit iterations for testing
    python autonomous_agent_demo.py --project-dir my-app --max-iterations 5

    # YOLO mode: rapid prototyping without browser testing
    python autonomous_agent_demo.py --project-dir my-app --yolo
"""

import argparse
import asyncio
from pathlib import Path

from dotenv import load_dotenv

# Load environment variables from .env file (if it exists)
# IMPORTANT: Must be called BEFORE importing other modules that read env vars at load time
load_dotenv()

from agent import run_autonomous_agent
from registry import get_project_path

# Configuration
# DEFAULT_MODEL = "claude-sonnet-4-5-20250929"
DEFAULT_MODEL = "claude-opus-4-5-20251101"

def parse_args() -> argparse.Namespace:
    """Parse command line arguments."""
    parser = argparse.ArgumentParser(
        description="Autonomous Coding Agent Demo - Long-running agent harness",
        formatter_class=argparse.RawDescriptionHelpFormatter,
        epilog="""
Examples:
  # Use absolute path directly
  python autonomous_agent_demo.py --project-dir C:/Projects/my-app

  # Use registered project name (looked up from registry)
  python autonomous_agent_demo.py --project-dir my-app

  # Use a specific model
  python autonomous_agent_demo.py --project-dir my-app --model claude-sonnet-4-5-20250929

  # Limit iterations for testing
  python autonomous_agent_demo.py --project-dir my-app --max-iterations 5

  # YOLO mode: rapid prototyping without browser testing
  python autonomous_agent_demo.py --project-dir my-app --yolo

Authentication:
  Uses Claude CLI credentials from ~/.claude/.credentials.json
  Run 'claude login' to authenticate (handled by start.bat/start.sh)
        """,
    )

    parser.add_argument(
        "--project-dir",
        type=str,
        required=True,
        help="Project directory path (absolute) or registered project name",
    )

    parser.add_argument(
        "--max-iterations",
        type=int,
        default=None,


     1→"""
     2→Claude SDK Client Configuration
     3→===============================
     4→
     5→Functions for creating and configuring the Claude Agent SDK client.
     6→"""
     7→
     8→import json
     9→import os
    10→import shutil
    11→import sys
    12→from pathlib import Path
    13→
    14→from claude_agent_sdk import ClaudeAgentOptions, ClaudeSDKClient
    15→from claude_agent_sdk.types import HookMatcher
    16→
    17→from security import bash_security_hook
    18→
    19→# Feature MCP tools for feature/test management
    20→FEATURE_MCP_TOOLS = [
    21→    "mcp__features__feature_get_stats",
    22→    "mcp__features__feature_get_next",
    23→    "mcp__features__feature_get_for_regression",
    24→    "mcp__features__feature_mark_in_progress",
    25→    "mcp__features__feature_mark_passing",
    26→    "mcp__features__feature_skip",
    27→    "mcp__features__feature_create_bulk",
    28→]
    29→
    30→# Playwright MCP tools for browser automation
    31→PLAYWRIGHT_TOOLS = [
    32→    # Core navigation & screenshots
    33→    "mcp__playwright__browser_navigate",
    34→    "mcp__playwright__browser_navigate_back",
    35→    "mcp__playwright__browser_take_screenshot",
    36→    "mcp__playwright__browser_snapshot",
    37→
    38→    # Element interaction
    39→    "mcp__playwright__browser_click",
    40→    "mcp__playwright__browser_type",
    41→    "mcp__playwright__browser_fill_form",
    42→    "mcp__playwright__browser_select_option",
    43→    "mcp__playwright__browser_hover",
    44→    "mcp__playwright__browser_drag",
    45→    "mcp__playwright__browser_press_key",
    46→
    47→    # JavaScript & debugging
    48→    "mcp__playwright__browser_evaluate",
    49→    # "mcp__playwright__browser_run_code",  # REMOVED - causes Playwright MCP server crash
    50→    "mcp__playwright__browser_console_messages",
    51→    "mcp__playwright__browser_network_requests",
    52→
    53→    # Browser management
    54→    "mcp__playwright__browser_close",
    55→    "mcp__playwright__browser_resize",
    56→    "mcp__playwright__browser_tabs",
    57→    "mcp__playwright__browser_wait_for",
    58→    "mcp__playwright__browser_handle_dialog",
    59→    "mcp__playwright__browser_file_upload",
    60→    "mcp__playwright__browser_install",
    61→]
    62→
    63→# Built-in tools
    64→BUILTIN_TOOLS = [
    65→    "Read",
    66→    "Write",
    67→    "Edit",
    68→    "Glob",
    69→    "Grep",
    70→    "Bash",
    71→    "WebFetch",
    72→    "WebSearch",
    73→]
    74→
    75→
    76→def create_client(project_dir: Path, model: str, yolo_mode: bool = False):
    77→    """
    78→    Create a Claude Agent SDK client with multi-layered security.
    79→
    80→    Args:
    81→        project_dir: Directory for the project
    82→        model: Claude model to use
    83→        yolo_mode: If True, skip Playwright MCP server for rapid prototyping
    84→
    85→    Returns:
    86→        Configured ClaudeSDKClient (from claude_agent_sdk)
    87→
    88→    Security layers (defense in depth):
    89→    1. Sandbox - OS-level bash command isolation prevents filesystem escape
    90→    2. Permissions - File operations restricted to project_dir only
    91→    3. Security hooks - Bash commands validated against an allowlist
    92→       (see security.py for ALLOWED_COMMANDS)
    93→
    94→    Note: Authentication is handled by start.bat/start.sh before this runs.
    95→    The Claude SDK auto-detects credentials from ~/.claude/.credentials.json
    96→    """
    97→    # Build allowed tools list based on mode
    98→    # In YOLO mode, exclude Playwright tools for faster prototyping
    99→    allowed_tools = [*BUILTIN_TOOLS, *FEATURE_MCP_TOOLS]
   100→    if not yolo_mode:

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Claude SDK Client Configuration
===============================

Functions for creating and configuring the Claude Agent SDK client.
"""

import json
import os
import shutil
import sys
from pathlib import Path

from claude_agent_sdk import ClaudeAgentOptions, ClaudeSDKClient
from claude_agent_sdk.types import HookMatcher

from security import bash_security_hook

# Feature MCP tools for feature/test management
FEATURE_MCP_TOOLS = [
    "mcp__features__feature_get_stats",
    "mcp__features__feature_get_next",
    "mcp__features__feature_get_for_regression",
    "mcp__features__feature_mark_in_progress",
    "mcp__features__feature_mark_passing",
    "mcp__features__feature_skip",
    "mcp__features__feature_create_bulk",
]

# Playwright MCP tools for browser automation
PLAYWRIGHT_TOOLS = [
    # Core navigation & screenshots
    "mcp__playwright__browser_navigate",
    "mcp__playwright__browser_navigate_back",
    "mcp__playwright__browser_take_screenshot",
    "mcp__playwright__browser_snapshot",

    # Element interaction
    "mcp__playwright__browser_click",
    "mcp__playwright__browser_type",
    "mcp__playwright__browser_fill_form",
    "mcp__playwright__browser_select_option",
    "mcp__playwright__browser_hover",
    "mcp__playwright__browser_drag",
    "mcp__playwright__browser_press_key",

    # JavaScript & debugging
    "mcp__playwright__browser_evaluate",
    # "mcp__playwright__browser_run_code",  # REMOVED - causes Playwright MCP server crash
    "mcp__playwright__browser_console_messages",
    "mcp__playwright__browser_network_requests",

    # Browser management
    "mcp__playwright__browser_close",
    "mcp__playwright__browser_resize",
    "mcp__playwright__browser_tabs",
    "mcp__playwright__browser_wait_for",
    "mcp__playwright__browser_handle_dialog",
    "mcp__playwright__browser_file_upload",
    "mcp__playwright__browser_install",
]

# Built-in tools
BUILTIN_TOOLS = [
    "Read",
    "Write",
    "Edit",
    "Glob",
    "Grep",
    "Bash",
    "WebFetch",
    "WebSearch",
]

def create_client(project_dir: Path, model: str, yolo_mode: bool = False):
    """
    Create a Claude Agent SDK client with multi-layered security.

    Args:
        project_dir: Directory for the project
        model: Claude model to use
        yolo_mode: If True, skip Playwright MCP server for rapid prototyping

    Returns:
        Configured ClaudeSDKClient (from claude_agent_sdk)

    Security layers (defense in depth):
    1. Sandbox - OS-level bash command isolation prevents filesystem escape
    2. Permissions - File operations restricted to project_dir only
    3. Security hooks - Bash commands validated against an allowlist
       (see security.py for ALLOWED_COMMANDS)

    Note: Authentication is handled by start.bat/start.sh before this runs.
    The Claude SDK auto-detects credentials from ~/.claude/.credentials.json
    """
    # Build allowed tools list based on mode
    # In YOLO mode, exclude Playwright tools for faster prototyping
    allowed_tools = [*BUILTIN_TOOLS, *FEATURE_MCP_TOOLS]
    if not yolo_mode:


Let me read more of the security configuration and check the UI App component:


ls -la "C:/Users/MikeSwanson/claude-projects/Autocode-remix/Autocoder-2.0/ui/src/" 2>/dev/null | grep -E "\.(tsx|ts)$"


     1→"""
     2→Security Hooks for Autonomous Coding Agent
     3→==========================================
     4→
     5→Pre-tool-use hooks that validate bash commands for security.
     6→Uses an allowlist approach - only explicitly permitted commands can run.
     7→"""
     8→
     9→import os
    10→import shlex
    11→
    12→# Allowed commands for development tasks
    13→# Extended set for full infrastructure access (sandbox disabled)
    14→ALLOWED_COMMANDS = {
    15→    # File inspection
    16→    "ls",
    17→    "cat",
    18→    "head",
    19→    "tail",
    20→    "wc",
    21→    "grep",
    22→    "find",
    23→    "which",
    24→    "whereis",
    25→    "file",
    26→    # File operations
    27→    "cp",
    28→    "mkdir",
    29→    "chmod",
    30→    "chown",
    31→    "ln",
    32→    "mv",
    33→    "rm",
    34→    "touch",
    35→    "tar",
    36→    "unzip",
    37→    "zip",
    38→    "gzip",
    39→    "gunzip",
    40→    # Directory
    41→    "pwd",
    42→    "cd",
    43→    # Output
    44→    "echo",
    45→    "printf",
    46→    "tee",
    47→    # Node.js development
    48→    "npm",
    49→    "npx",
    50→    "pnpm",
    51→    "yarn",
    52→    "node",
    53→    # Python development
    54→    "python",
    55→    "python3",
    56→    "pip",
    57→    "pip3",
    58→    "uv",
    59→    "poetry",
    60→    # Rust development
    61→    "cargo",
    62→    "rustc",
    63→    "rustup",
    64→    # Version control
    65→    "git",
    66→    "gh",  # GitHub CLI
    67→    # Remote access (infrastructure)
    68→    "ssh",
    69→    "scp",
    70→    "rsync",
    71→    "sftp",
    72→    # Docker
    73→    "docker",
    74→    "docker-compose",
    75→    # Process management
    76→    "ps",
    77→    "lsof",
    78→    "sleep",
    79→    "kill",
    80→    "pkill",
    81→    "nohup",
    82→    "timeout",
    83→    # Network/API testing
    84→    "curl",
    85→    "wget",
    86→    "ping",
    87→    "nslookup",
    88→    "dig",
    89→    "nc",
    90→    "netcat",
    91→    "telnet",
    92→    # System info
    93→    "uname",
    94→    "hostname",
    95→    "whoami",
    96→    "id",
    97→    "env",
    98→    "printenv",
    99→    "date",
   100→    "df",

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

"""
Security Hooks for Autonomous Coding Agent
==========================================

Pre-tool-use hooks that validate bash commands for security.
Uses an allowlist approach - only explicitly permitted commands can run.
"""

import os
import shlex

# Allowed commands for development tasks
# Extended set for full infrastructure access (sandbox disabled)
ALLOWED_COMMANDS = {
    # File inspection
    "ls",
    "cat",
    "head",
    "tail",
    "wc",
    "grep",
    "find",
    "which",
    "whereis",
    "file",
    # File operations
    "cp",
    "mkdir",
    "chmod",
    "chown",
    "ln",
    "mv",
    "rm",
    "touch",
    "tar",
    "unzip",
    "zip",
    "gzip",
    "gunzip",
    # Directory
    "pwd",
    "cd",
    # Output
    "echo",
    "printf",
    "tee",
    # Node.js development
    "npm",
    "npx",
    "pnpm",
    "yarn",
    "node",
    # Python development
    "python",
    "python3",
    "pip",
    "pip3",
    "uv",
    "poetry",
    # Rust development
    "cargo",
    "rustc",
    "rustup",
    # Version control
    "git",
    "gh",  # GitHub CLI
    # Remote access (infrastructure)
    "ssh",
    "scp",
    "rsync",
    "sftp",
    # Docker
    "docker",
    "docker-compose",
    # Process management
    "ps",
    "lsof",
    "sleep",
    "kill",
    "pkill",
    "nohup",
    "timeout",
    # Network/API testing
    "curl",
    "wget",
    "ping",
    "nslookup",
    "dig",
    "nc",
    "netcat",
    "telnet",
    # System info
    "uname",
    "hostname",
    "whoami",
    "id",
    "env",
    "printenv",
    "date",
    "df",


     1→import { useState, useEffect, useCallback } from 'react'
     2→import { useProjects, useFeatures, useAgentStatus } from './hooks/useProjects'
     3→import { useProjectWebSocket } from './hooks/useWebSocket'
     4→import { useFeatureSound } from './hooks/useFeatureSound'
     5→import { useCelebration } from './hooks/useCelebration'
     6→
     7→const STORAGE_KEY = 'autocoder-selected-project'
     8→import { ProjectSelector } from './components/ProjectSelector'
     9→import { KanbanBoard } from './components/KanbanBoard'
    10→import { AgentControl } from './components/AgentControl'
    11→import { ProgressDashboard } from './components/ProgressDashboard'
    12→import { SetupWizard } from './components/SetupWizard'
    13→import { AddFeatureForm } from './components/AddFeatureForm'
    14→import { FeatureModal } from './components/FeatureModal'
    15→import { DebugLogViewer } from './components/DebugLogViewer'
    16→import { AgentThought } from './components/AgentThought'
    17→import { AssistantFAB } from './components/AssistantFAB'
    18→import { AssistantPanel } from './components/AssistantPanel'
    19→import { GitPanel } from './components/GitPanel'
    20→import { TerminalChat } from './components/TerminalChat'
    21→import { ReferenceFoldersPanel } from './components/ReferenceFoldersPanel'
    22→import { Plus, Loader2, GitBranch, Terminal, X, FolderSearch } from 'lucide-react'
    23→import type { Feature } from './lib/types'
    24→
    25→function App() {
    26→  // Initialize selected project from localStorage
    27→  const [selectedProject, setSelectedProject] = useState<string | null>(() => {
    28→    try {
    29→      return localStorage.getItem(STORAGE_KEY)
    30→    } catch {
    31→      return null
    32→    }
    33→  })
    34→  const [showAddFeature, setShowAddFeature] = useState(false)
    35→  const [selectedFeature, setSelectedFeature] = useState<Feature | null>(null)
    36→  const [setupComplete, setSetupComplete] = useState(true) // Start optimistic
    37→  const [debugOpen, setDebugOpen] = useState(false)
    38→  const [debugPanelHeight, setDebugPanelHeight] = useState(288) // Default height
    39→  const [assistantOpen, setAssistantOpen] = useState(false)
    40→  const [gitPanelOpen, setGitPanelOpen] = useState(false)
    41→  const [terminalOpen, setTerminalOpen] = useState(false)
    42→  const [referencesOpen, setReferencesOpen] = useState(false)
    43→
    44→  const { data: projects, isLoading: projectsLoading } = useProjects()
    45→  const { data: features } = useFeatures(selectedProject)
    46→  const { data: agentStatusData } = useAgentStatus(selectedProject)
    47→  const wsState = useProjectWebSocket(selectedProject)
    48→
    49→  // Play sounds when features move between columns
    50→  useFeatureSound(features)
    51→
    52→  // Celebrate when all features are complete
    53→  useCelebration(features, selectedProject)
    54→
    55→  // Persist selected project to localStorage
    56→  const handleSelectProject = useCallback((project: string | null) => {
    57→    setSelectedProject(project)
    58→    try {
    59→      if (project) {
    60→        localStorage.setItem(STORAGE_KEY, project)
    61→      } else {
    62→        localStorage.removeItem(STORAGE_KEY)
    63→      }
    64→    } catch {
    65→      // localStorage not available
    66→    }
    67→  }, [])
    68→
    69→  // Validate stored project exists (clear if project was deleted)
    70→  useEffect(() => {
    71→    if (selectedProject && projects && !projects.some(p => p.name === selectedProject)) {
    72→      handleSelectProject(null)
    73→    }
    74→  }, [selectedProject, projects, handleSelectProject])
    75→
    76→  // Keyboard shortcuts
    77→  useEffect(() => {
    78→    const handleKeyDown = (e: KeyboardEvent) => {
    79→      // Ignore if user is typing in an input
    80→      if (e.target instanceof HTMLInputElement || e.target instanceof HTMLTextAreaElement) {

<system-reminder>
Whenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.
</system-reminder>

import { useState, useEffect, useCallback } from 'react'
import { useProjects, useFeatures, useAgentStatus } from './hooks/useProjects'
import { useProjectWebSocket } from './hooks/useWebSocket'
import { useFeatureSound } from './hooks/useFeatureSound'
import { useCelebration } from './hooks/useCelebration'

const STORAGE_KEY = 'autocoder-selected-project'
import { ProjectSelector } from './components/ProjectSelector'
import { KanbanBoard } from './components/KanbanBoard'
import { AgentControl } from './components/AgentControl'
import { ProgressDashboard } from './components/ProgressDashboard'
import { SetupWizard } from './components/SetupWizard'
import { AddFeatureForm } from './components/AddFeatureForm'
import { FeatureModal } from './components/FeatureModal'
import { DebugLogViewer } from './components/DebugLogViewer'
import { AgentThought } from './components/AgentThought'
import { AssistantFAB } from './components/AssistantFAB'
import { AssistantPanel } from './components/AssistantPanel'
import { GitPanel } from './components/GitPanel'
import { TerminalChat } from './components/TerminalChat'
import { ReferenceFoldersPanel } from './components/ReferenceFoldersPanel'
import { Plus, Loader2, GitBranch, Terminal, X, FolderSearch } from 'lucide-react'
import type { Feature } from './lib/types'

function App() {
  // Initialize selected project from localStorage
  const [selectedProject, setSelectedProject] = useState<string | null>(() => {
    try {
      return localStorage.getItem(STORAGE_KEY)
    } catch {
      return null
    }
  })
  const [showAddFeature, setShowAddFeature] = useState(false)
  const [selectedFeature, setSelectedFeature] = useState<Feature | null>(null)
  const [setupComplete, setSetupComplete] = useState(true) // Start optimistic
  const [debugOpen, setDebugOpen] = useState(false)
  const [debugPanelHeight, setDebugPanelHeight] = useState(288) // Default height
  const [assistantOpen, setAssistantOpen] = useState(false)
  const [gitPanelOpen, setGitPanelOpen] = useState(false)
  const [terminalOpen, setTerminalOpen] = useState(false)
  const [referencesOpen, setReferencesOpen] = useState(false)

  const { data: projects, isLoading: projectsLoading } = useProjects()
  const { data: features } = useFeatures(selectedProject)
  const { data: agentStatusData } = useAgentStatus(selectedProject)
  const wsState = useProjectWebSocket(selectedProject)

  // Play sounds when features move between columns
  useFeatureSound(features)

  // Celebrate when all features are complete
  useCelebration(features, selectedProject)

  // Persist selected project to localStorage
  const handleSelectProject = useCallback((project: string | null) => {
    setSelectedProject(project)
    try {
      if (project) {
        localStorage.setItem(STORAGE_KEY, project)
      } else {
        localStorage.removeItem(STORAGE_KEY)
      }
    } catch {
      // localStorage not available
    }
  }, [])

  // Validate stored project exists (clear if project was deleted)
  useEffect(() => {
    if (selectedProject && projects && !projects.some(p => p.name === selectedProject)) {
      handleSelectProject(null)
    }
  }, [selectedProject, projects, handleSelectProject])

  // Keyboard shortcuts
  useEffect(() => {
    const handleKeyDown = (e: KeyboardEvent) => {
      // Ignore if user is typing in an input
      if (e.target instanceof HTMLInputElement || e.target instanceof HTMLTextAreaElement) {


-rw-r--r-- 1 AzureAD+MikeSwanson 4096 14884 Jan 10 14:32 App.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096   531 Jan  8 08:02 main.tsx
-rw-r--r-- 1 AzureAD+MikeSwanson 4096    38 Jan  8 08:02 vite-env.d.ts


Let me check a few more important files to complete the documentation: